Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19a20
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260...    31   0.80 
02_03_0360 + 18104948-18106159                                         29   4.2  
01_06_1258 + 35806557-35806932,35807517-35807679,35807789-358078...    29   4.2  
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857...    28   5.6  
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396           27   9.8  
03_01_0303 + 2369607-2371958                                           27   9.8  

>11_05_0081 -
           18924353-18924462,18925068-18925187,18925569-18926086,
           18927392-18927471,18927680-18927782,18928084-18928295,
           18928392-18929210,18929331-18929444,18929935-18929983,
           18930115-18930271,18930354-18930807,18930938-18931147
          Length = 981

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 336 LIAVAMLSTHYYFKYLGNDWTKKGGWKVLKTKPMVL 443
           +I  A+L  H Y+ +L  DW KK  W  L   PM L
Sbjct: 578 VIVYALLIVHGYYLFLTKDWYKKTTWMYLAV-PMFL 612


>02_03_0360 + 18104948-18106159
          Length = 403

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 96  SERERCLGMTDAERAWRKQWLKDQVLAAHEPVHVEEYW 209
           SER + L   DAER    + L++Q+LA H  V V + W
Sbjct: 363 SERSKDLDEEDAERYEAIKNLREQMLAGHGFVLVSQEW 400


>01_06_1258 +
           35806557-35806932,35807517-35807679,35807789-35807837,
           35807943-35808866,35808954-35809049,35809142-35809257,
           35809345-35809447,35809570-35809658,35809750-35809900,
           35809995-35810141,35810238-35810366,35810451-35810529,
           35810616-35810725
          Length = 843

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 336 LIAVAMLSTHYYFKYLGNDWTKKGGWKVL 422
           ++A  +L  H YF +L  +W KK  W  L
Sbjct: 481 VLAYVLLVVHSYFIFLTREWYKKTTWMYL 509


>03_02_0446 -
           8567436-8567567,8567649-8567768,8569837-8569914,
           8570018-8570122,8570214-8570306,8570464-8570619
          Length = 227

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 280 QCWENNVLHIIDIYLENLV*SLWLCYQHIT 369
           Q +E+N+  I+D    + V S W+CY H+T
Sbjct: 69  QSYEDNIKKIVDF---STVESFWVCYCHLT 95


>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
          Length = 1357

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 399 KKGGWKVLKTKPMVLPGQPGFPFKSEKTDSDY 494
           KKG W     + +VLPG+       +KTD DY
Sbjct: 98  KKGKWPDEPKRHVVLPGKRKIVGIEDKTDEDY 129


>03_01_0303 + 2369607-2371958
          Length = 783

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
 Frame = +3

Query: 207 WRERTNPIRRFYRKPLDVLFAKLTPMLGEQRAAHYRYISGKLGLIAVAMLSTH--YYFKY 380
           W     P  R        +F      L E+ AA  R + G   + A   +  H  Y +++
Sbjct: 70  WEREKRPSSRLLYS-YHTVFDGFAVQLTEEEAAALRELPGVASVRADRRVELHTTYSYRF 128

Query: 381 LGNDWTKKGGW 413
           LG D+   G W
Sbjct: 129 LGLDFCPTGAW 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,846,933
Number of Sequences: 37544
Number of extensions: 356503
Number of successful extensions: 847
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)