Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19a15
         (744 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1VXQ7 Cluster: Sensor protein; n=1; Psychroflexus torq...    35   2.4  
UniRef50_Q24IJ8 Cluster: Putative uncharacterized protein; n=1; ...    34   3.2  
UniRef50_Q8WS61 Cluster: Kinesin light chain-like protein; n=1; ...    34   4.2  
UniRef50_Q5BDI9 Cluster: Putative uncharacterized protein; n=1; ...    33   5.6  
UniRef50_UPI0000F2AFB5 Cluster: PREDICTED: similar to chmadrin (...    33   7.4  
UniRef50_Q4P0G4 Cluster: Putative uncharacterized protein; n=1; ...    33   7.4  
UniRef50_Q1YRD9 Cluster: Smr domain (Small MutS Related) contain...    33   9.8  

>UniRef50_Q1VXQ7 Cluster: Sensor protein; n=1; Psychroflexus torquis
           ATCC 700755|Rep: Sensor protein - Psychroflexus torquis
           ATCC 700755
          Length = 797

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 389 NARKSDAKAENALNFI-YQAGLKQTSFTDEEKKSLGALLA-TAIKPIKVNIE 538
           N  KSD K E+AL ++     LK + F DE+ K+LG L A    K +K  +E
Sbjct: 447 NISKSDGKPEDALKYLEVHDKLKDSLFNDEKSKALGILEAELGFKSLKEQLE 498


>UniRef50_Q24IJ8 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1501

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 18/59 (30%), Positives = 34/59 (57%)
 Frame = +2

Query: 305 STHTGMSLKTKLIQCLQDLKEVNYTDRINARKSDAKAENALNFIYQAGLKQTSFTDEEK 481
           +T+     K K +Q  Q ++   YT++++   ++ K+ NA N   Q+GLKQT  T+ ++
Sbjct: 116 NTNGSQKQKLKTVQQNQQVRNQYYTEQVD-HVNNKKSNNASNVTNQSGLKQTLQTNSDE 173


>UniRef50_Q8WS61 Cluster: Kinesin light chain-like protein; n=1;
           Branchiostoma floridae|Rep: Kinesin light chain-like
           protein - Branchiostoma floridae (Florida lancelet)
           (Amphioxus)
          Length = 373

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +2

Query: 311 HTGMSLKTKLIQCLQDLKEVNYTDRINARKSDAK 412
           H G+S K  L+ CL+DL++    +++NA KSD K
Sbjct: 338 HDGLSKKEVLL-CLEDLEKAKKAEKLNAAKSDGK 370


>UniRef50_Q5BDI9 Cluster: Putative uncharacterized protein; n=1;
            Emericella nidulans|Rep: Putative uncharacterized protein
            - Emericella nidulans (Aspergillus nidulans)
          Length = 941

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
 Frame = +2

Query: 296  SDISTHTGMSLKTKLIQCLQD--LKEVNYTDRINARKSDAKAENALNFIYQAGLKQTSFT 469
            SD+     ++ +  + Q + D  L ++    +  A +S  K +   +    +GL   S  
Sbjct: 692  SDVPGRARITKEKAIRQLVADIVLSQIISVPQKEAAESTTKKDVTWSAFSSSGLNTLSRL 751

Query: 470  DEEKKSLGALLATAIKPIKVNIEGTACVYRTRLDNSVLMKRSAVQ 604
            ++EK S GALL++A + + ++   TA    + L +SVL +R   Q
Sbjct: 752  NDEKSSYGALLSSADESV-LSPADTAAAQSSTLGDSVLPERQTDQ 795


>UniRef50_UPI0000F2AFB5 Cluster: PREDICTED: similar to chmadrin (short
            type); n=1; Monodelphis domestica|Rep: PREDICTED: similar
            to chmadrin (short type) - Monodelphis domestica
          Length = 2146

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +2

Query: 293  ISDISTHTGMSLKTKLIQCLQDLK-EVNYTDRINARKSDAKAENALNFIYQAGLKQTSFT 469
            +SDI +HTG   K  +   L++ K +   T    + +S  K +  LNF   A     ++T
Sbjct: 1636 LSDIISHTGRDEKKPMKVVLKEEKLKAQITSSGISLRSRKKNKEMLNFGDLAPDSDKTYT 1695

Query: 470  DEEKKSLGAL 499
            DEEK+S+ +L
Sbjct: 1696 DEEKESVKSL 1705


>UniRef50_Q4P0G4 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 348

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
 Frame = +2

Query: 260 HPDG-VKTEQ*QISDISTHTGMSLK-TKLIQCLQDLKEVNYTDRINARKSDAKAENALNF 433
           H DG   T+Q  ++++   +  S K T L    Q+L+ + Y D I  +K +A  +   + 
Sbjct: 60  HCDGDANTDQRTLAEVGLSSSPSTKLTVLGPSSQELERL-YQDEIELQKRNAPRQYHPSL 118

Query: 434 IYQAGLKQTSFTDEEKKSLGALLATAIKPIKVNIEGTACVYRTRL 568
           ++    + TS  +      G++ A    P+   + G    Y TRL
Sbjct: 119 LHGTKARNTSRAEATVSPFGSVYAHPSTPVSSPLHGKVIDYLTRL 163


>UniRef50_Q1YRD9 Cluster: Smr domain (Small MutS Related) containing
           protein; n=1; gamma proteobacterium HTCC2207|Rep: Smr
           domain (Small MutS Related) containing protein - gamma
           proteobacterium HTCC2207
          Length = 213

 Score = 32.7 bits (71), Expect = 9.8
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +2

Query: 470 DEEKKSLGALLATAIKPIKVNIEGTACVYRT-RLDNSVLMKRSAVQYLIDDFGSFPLENS 646
           D+ ++   AL   A++P++   +G A V ++ +L   VL +R A Q  + D G+F   NS
Sbjct: 18  DDLEEDFDALFGDAVEPLRG--KGAAFVAKSAQLTPGVLARRQAAQLEVQDEGNFLDPNS 75

Query: 647 ILTKV 661
           I+ +V
Sbjct: 76  IIEQV 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,149,397
Number of Sequences: 1657284
Number of extensions: 11081459
Number of successful extensions: 27418
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27412
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)