Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19a15
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.06c |||mitochondrial ribosomal protein subunit L36|Schizo...    30   0.40 
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    27   3.7  

>SPBC83.06c |||mitochondrial ribosomal protein subunit
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 59

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -1

Query: 687 LTPIFASSRTLVNIEFSRGNEPKSSI-KYCTADLFIR 580
           LTP F  S +L+   FSRG + K+S+ K C++  F+R
Sbjct: 3   LTPAFRLSPSLLPWNFSRGFKVKASVKKRCSSCYFVR 39


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 560 TRLDNSVLMKRSAVQYLIDDFGSFPLENSILTKVLDEAN 676
           T +D   L       YL+D +  FPL+   L  + DE N
Sbjct: 535 TSMDAKALKGSDGRTYLMDLYSLFPLDAQFLEVISDEKN 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,919
Number of Sequences: 5004
Number of extensions: 51082
Number of successful extensions: 152
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)