Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19a15
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        31   0.75 
SB_46119| Best HMM Match : Ank (HMM E-Value=9.8e-16)                   29   5.3  
SB_36862| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  

>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +2

Query: 440  QAGLKQTSFTDEEKKSLGALLATAIKPIKV-NIEGTACVYRTRLDNSVLMKRSAVQYLID 616
            +  LK T   D E++    L+A  +   K+ + +GT       L+  +   +  +Q L D
Sbjct: 1712 ETALKVTQ--DREREMNDKLMALYVNMSKLESTQGTLEEKNAELEKELYSAQQEIQPLKD 1769

Query: 617  DFGSFPLENSILTKVLDEAN 676
             F +   EN  L K L+EAN
Sbjct: 1770 SFNTAVAENESLVKELNEAN 1789


>SB_46119| Best HMM Match : Ank (HMM E-Value=9.8e-16)
          Length = 374

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 335 KLIQCLQDLKEVNYTDRINARKSDAKAENALNFIYQAGL--KQTSFTDE 475
           K  +C+  L+E+  +D INA+ S  +++N  N  +  GL  K+ SF  E
Sbjct: 209 KFHRCILQLREIGSSDEINAKDSLQESKNE-NGSFTKGLKNKRVSFAPE 256


>SB_36862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 624

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +2

Query: 446 GLKQTSFTDEEKKSLGALLATAIKPIKVNIEGTACVYRTRLDNSVLMKRSAVQYLIDDFG 625
           G  +T +  +  ++ G +  T I P     EG    +R+R+  S  +K    +  +DDFG
Sbjct: 162 GWTRTEYVRKGGRTQGRVDVTVINP-----EGKQ--FRSRVQLSEFLKEQQSKLSVDDFG 214

Query: 626 SFPL 637
            FPL
Sbjct: 215 FFPL 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,819,286
Number of Sequences: 59808
Number of extensions: 359715
Number of successful extensions: 777
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)