Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19a15
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               27   0.25 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   0.75 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   7.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.0  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +2

Query: 386 INARKSDAKAENALNFI 436
           INA KS  K EN LNFI
Sbjct: 119 INANKSTDKCENGLNFI 135


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 338 LIQCLQDLKEVNYTDRINARKSDAKAENALNFIYQAGLKQTSFTDEEKK 484
           LI CL    + + T  I+ RKS    E+++N I++       F  +EK+
Sbjct: 7   LIVCLSIACQ-DVTSAIHQRKSSKNLEHSMNVIHEWKYIDYDFGSDEKR 54


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 305 STHTGMSLKTKLIQCLQDL 361
           ST+ G++    L+QCL+DL
Sbjct: 62  STNIGINKWRFLLQCLEDL 80


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 325 RHSSMGGDITYLLLFRFNSVWM 260
           R +  GG + YL L   + VWM
Sbjct: 96  RFNDFGGRLKYLTLTDASRVWM 117


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 325 RHSSMGGDITYLLLFRFNSVWM 260
           R +  GG + YL L   + VWM
Sbjct: 96  RFNDFGGRLKYLTLTDASRVWM 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,879
Number of Sequences: 438
Number of extensions: 4021
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)