Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19a14
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058...    42   1e-04
03_01_0468 - 3612079-3612197,3612679-3612850                           36   0.016
01_03_0183 + 13543833-13544051,13544161-13544257,13545616-135457...    27   5.7  
03_05_0052 - 20293197-20293310,20293938-20294024,20294133-202942...    27   7.6  
01_06_0020 + 25630728-25631023,25631308-25631548,25631629-256317...    27   7.6  

>10_07_0172 +
           13804803-13805293,13805423-13805537,13805766-13805831,
           13805921-13806009,13806103-13806193,13806312-13806458,
           13806575-13806667,13806745-13806846,13806957-13807541,
           13808523-13808813,13808866-13808937
          Length = 713

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -3

Query: 266 SQPPSFTFRFKKSEDVSVTDRSFHVPDDLTAGLPNELDLHLSTLALRTSTAEYFHDTSK 90
           +QPP    R ++ EDV++TDR+  VP D T  +  EL   L  L      A + H   K
Sbjct: 605 AQPPGLPLRLEQGEDVALTDRALDVPHDETVLVVEELHSDLGHLTPGAGAAHHLHHDGK 663


>03_01_0468 - 3612079-3612197,3612679-3612850
          Length = 96

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -3

Query: 266 SQPPSFTFRFKKSEDVSVTDRSFHVPDDLTAGLPNELDLHLSTL 135
           ++PP      ++ EDV++++R+  VP D T  +  ELD HL  L
Sbjct: 10  AKPPGLPLGLEQGEDVALSNRALDVPHDETVLVIQELDSHLGHL 53


>01_03_0183 +
           13543833-13544051,13544161-13544257,13545616-13545707,
           13545928-13546047,13546170-13546355,13546439-13546602,
           13546691-13546769,13548256-13548387,13548560-13548687,
           13548785-13549140,13549211-13549221,13549312-13549431,
           13549510-13549637,13552210-13552260,13553105-13553189,
           13553856-13553954,13555260-13555535
          Length = 780

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +2

Query: 83  QRSC-SCRESTRPYWFSGP 136
           +RSC  CR +T P W SGP
Sbjct: 667 RRSCVECRATTTPMWRSGP 685


>03_05_0052 -
           20293197-20293310,20293938-20294024,20294133-20294270,
           20295009-20295128,20295236-20295343,20296053-20296133,
           20296216-20296456,20297010-20297305
          Length = 394

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 21  SFGARVLIVLSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVK 200
           S   RVLI     L    D PN     +  +GR+G  G+   V + F+ +   +I+R+++
Sbjct: 318 SGATRVLITTDVSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAINFVKKEDIRILRDIE 376


>01_06_0020 +
           25630728-25631023,25631308-25631548,25631629-25631709,
           25632109-25632216,25632329-25632448,25632806-25632943,
           25633064-25633150,25633802-25633915
          Length = 394

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 21  SFGARVLIVLSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVK 200
           S   RVLI     L    D PN     +  +GR+G  G+   V + F+ +   +I+R+++
Sbjct: 318 SGATRVLITTDVSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAINFVKKEDIRILRDIE 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,497,142
Number of Sequences: 37544
Number of extensions: 193431
Number of successful extensions: 434
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)