Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19a13
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 31 0.22
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.66
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch... 29 0.66
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 29 0.87
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 28 1.2
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 28 1.5
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 28 1.5
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 28 1.5
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.7
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 27 3.5
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi... 26 4.7
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 6.1
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.1
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 25 8.1
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 8.1
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 30.7 bits (66), Expect = 0.22
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 514 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDA 678
EGE DD+ +ES + +++ +S+K + E +ND R E + + L A
Sbjct: 373 EGELDDILTTLESDREQLRRHEEHSQKLLKFIEEIRNDYEERIHALESQNSALKA 427
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.1 bits (62), Expect = 0.66
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Frame = +1
Query: 448 LLKILMRLNFDNKSNALLHLQTEGERDDLRDK-----------IESVLKHVKKLNTNSEK 594
L K+L D++ LL Q E ER DL+ E+ +K ++ TNS+
Sbjct: 521 LRKLLREQTQDSQKLRLLVEQLELERQDLKQAGENHYSNLSSDYETQIKSLESSLTNSQA 580
Query: 595 FMVTHETFKNDVGNRFEQFELRLNE 669
V+ + N++ ++ ++ +L+LNE
Sbjct: 581 ECVSFQEKINELNSQIDELKLKLNE 605
>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 29.1 bits (62), Expect = 0.66
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +1
Query: 367 LNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR--LNFDNKSNALLHLQTEGERDDLRD 540
LN ++ +R +N++ T QG + + +NF NK N L E DLR
Sbjct: 114 LNFLMSGMADLQRTINTMQGTMNTMQGTMNTMQENMINFTNKVNTLDMRSVRAENRDLR- 172
Query: 541 KIESVLKHVKKLNTNS 588
K V+ V +N N+
Sbjct: 173 KGAYVISPVPFINGNN 188
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 28.7 bits (61), Expect = 0.87
Identities = 24/111 (21%), Positives = 46/111 (41%)
Frame = +1
Query: 343 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGE 522
W + ++ + E IF K S + N + + F Q M FD N + ++ GE
Sbjct: 99 WANTKLGGIFERIFSKMDSMQ--NDMNSRFDAMQNE----MNSRFDTVQNEMTSMK--GE 150
Query: 523 RDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELD 675
+++ ++ + + +LNT + E + RF + R N +D
Sbjct: 151 MAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFNSID 201
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/71 (19%), Positives = 33/71 (46%)
Frame = +1
Query: 379 IFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 558
I ++++ D SL ++ ++ NF +++ H ++ + +LR + +
Sbjct: 247 IIDQEETSSDDESLSKEIVNSNPIMCMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIK 306
Query: 559 KHVKKLNTNSE 591
KH K+ N+E
Sbjct: 307 KHAKEAQKNAE 317
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 373 EIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSN 492
++ FH Q+ KRD+ +L ++ T L L+ F + +N
Sbjct: 79 QLEFHAQEGKRDVTNLTCVYGTSPQQLDRLITREFSSDAN 118
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 27.9 bits (59), Expect = 1.5
Identities = 24/111 (21%), Positives = 46/111 (41%)
Frame = +1
Query: 343 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGE 522
W + ++ + E IF K S + N + + F Q M FD N + ++ GE
Sbjct: 99 WANTKLGGIFERIFSKMDSMQ--NDMNSRFDAMQNE----MNSRFDAVQNEMTSMK--GE 150
Query: 523 RDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELD 675
+++ ++ + + +LNT + E + RF + R N +D
Sbjct: 151 MAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFNSID 201
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.9 bits (59), Expect = 1.5
Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Frame = +1
Query: 301 KGLEIAHDDILDCNWDSDQVYHLNEIIFHK-QKSKRDLNSLGALFATKQGLLKILMRLNF 477
K EI + +CN D++ E++ + KR SL + K+ L K L N
Sbjct: 298 KKFEILKRERNECNAKIDELQDKLELLTDAYNREKRRARSLEERMS-KEMLTK-LGESNV 355
Query: 478 DNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFEL 657
D+ A + + E++ L + ++S+ + + + + + ++ E++ +GN+ +
Sbjct: 356 DDGMAASRYDTVKREKERLSEHLKSLQEQYEHIQSVYKNVLLDRESYIMRLGNKISENNE 415
Query: 658 RLNE 669
LNE
Sbjct: 416 LLNE 419
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = +1
Query: 508 QTEGERDDLRDKIESVLKHVKKLNTNSEKF---MVTHETFKNDVGNRFEQFELRLNELDA 678
+ EG++ DL KI + K KLNT + T + ++ +R + E RLN L
Sbjct: 512 ELEGKKADLTSKINRLDKDFVKLNTTYSLLTDQVKTKQLALQEIESRVIRLEERLNMLQK 571
Query: 679 XT*HAAVGRKIE 714
+ A+ E
Sbjct: 572 LSMQPAISSSSE 583
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 322 RAQFQDLCKNLLHCRIL 272
RA+F +LC N+LH R L
Sbjct: 396 RAKFNNLCSNILHFRAL 412
>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 4.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 172 HINVQQWSHIVKWDSFKCNTHSF 240
H++V WS I K+D++ S+
Sbjct: 74 HLSVDSWSSITKYDNYTVENESY 96
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 6.1
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 478 DNKSNALLHLQTEGER--DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQF 651
D +SN +H ++ +DLR KI + + V K+N E +T E K + + +Q
Sbjct: 588 DIESNLDIHKDKLDQQAVEDLRSKITDLRETVAKVNAGDEG--ITSEDMKKKI-DEIQQL 644
Query: 652 ELRLNE 669
L++ E
Sbjct: 645 SLKVFE 650
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -3
Query: 433 RTMRPTS*DRVWISACEK*FRLN--GKLDR---CPNCNQVCRRAQFQDLCKNL 290
RT +P D +W +AC++ +N K R P C Q+C +Q D NL
Sbjct: 81 RTCQPKQHDSIWCTACQQTKGINEFSKAQRHVLDPRC-QICVHSQRNDGDDNL 132
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 550 SVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDA 678
+ L H+ L + H TFK++V N +EL +EL A
Sbjct: 350 AALNHISALEKETISHTDLHHTFKHEV-NSSNNYELTNDELAA 391
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 409 LNSLGALFA-TKQGLLKI----LMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 558
+ S G L A T+ G+ + LMR +F+ L+ GE+DD + E+++
Sbjct: 1381 MTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIM 1435
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,850
Number of Sequences: 5004
Number of extensions: 47246
Number of successful extensions: 186
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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