Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19a13
(714 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10439| Best HMM Match : Metallothio_7 (HMM E-Value=3.6) 38 0.008
SB_22572| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_49461| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_9009| Best HMM Match : Peptidase_C1 (HMM E-Value=5.9e-40) 32 0.40
SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17) 31 0.70
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06) 31 0.70
SB_55161| Best HMM Match : Kunitz_BPTI (HMM E-Value=6.3) 31 0.93
SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_40986| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_17743| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_48918| Best HMM Match : Transformer (HMM E-Value=2.6) 29 2.8
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 29 2.8
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_15426| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6) 29 3.7
SB_2503| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6) 29 3.7
SB_34049| Best HMM Match : PSI (HMM E-Value=2.6) 29 3.7
SB_49235| Best HMM Match : Peptidase_C1 (HMM E-Value=7.5e-07) 29 4.9
SB_17477| Best HMM Match : PSI (HMM E-Value=1.7) 29 4.9
SB_51097| Best HMM Match : Peptidase_C1 (HMM E-Value=9.3e-07) 29 4.9
SB_19175| Best HMM Match : 7tm_1 (HMM E-Value=4.2e-05) 29 4.9
SB_45821| Best HMM Match : zf-B_box (HMM E-Value=1.1e-12) 28 6.5
SB_32308| Best HMM Match : MIF4G (HMM E-Value=1.5e-17) 28 6.5
SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06) 28 8.6
SB_53570| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 8.6
SB_4274| Best HMM Match : LRV (HMM E-Value=5.7) 28 8.6
>SB_10439| Best HMM Match : Metallothio_7 (HMM E-Value=3.6)
Length = 288
Score = 37.9 bits (84), Expect = 0.008
Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
Frame = -3
Query: 490 CFCCQNLTA-SKFSTTPAWSRTMRPTS*DR-VWISACEK*FRLNGKLDRCPNCNQVCRRA 317
C CC + ++ T +R + R V I C + +NG RC N R
Sbjct: 163 CSCCVTMNGCARCVTMNGGARCVTMNGCARCVTIYDCARCVTMNG-CARCVTMNGCARCV 221
Query: 316 QFQDL--CKNLLHC-RILRSCRCARICT*N-CACCI*MNPI*RCATIVGRLC 173
C + C R + CAR T N CACC+ MN RC T+ G C
Sbjct: 222 TMNGCARCVTMNGCARCVTMNGCARCVTMNGCACCVTMNGYPRCVTMNGCAC 273
>SB_22572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 32.7 bits (71), Expect = 0.30
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = -3
Query: 403 VWISACEK*FRLNGKLDRCPNCNQVCRRAQFQDL--CKNLLHC-RILRSCRCARICT*N- 236
V ++ C + +NG RC N R D C + C R + C R T N
Sbjct: 443 VTMNGCARCVTMNG-CARCVTMNGCARCVTIYDCARCVTMNGCARCVTMNGCPRCVTMNG 501
Query: 235 CACCI*MNPI*RCATIVGRLC 173
CA C+ MN RC T+ G C
Sbjct: 502 CAHCVTMNGYPRCVTMNGCTC 522
>SB_49461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 32.3 bits (70), Expect = 0.40
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 253 VHNDTNAKFYNVIDFCKG---LEIAHDDILDCNWDSDQVYHLN 372
+H++ N N F K L +A +LDC W + +VYH N
Sbjct: 19 IHHNKNTDDNNNNSFVKKGELLNLAEQQLLDCTWSTPEVYHGN 61
>SB_9009| Best HMM Match : Peptidase_C1 (HMM E-Value=5.9e-40)
Length = 251
Score = 32.3 bits (70), Expect = 0.40
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 253 VHNDTNAKFYNVIDF---CKGLEIAHDDILDCNWDSDQVYHLN 372
+H++ N N F C+ L +A +LDC W + VYH N
Sbjct: 25 IHHNKNTDDNNNNSFVKKCELLNLAEQQLLDCTWSTPGVYHGN 67
>SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
Length = 755
Score = 31.5 bits (68), Expect = 0.70
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = -3
Query: 403 VWISACEK*FRLNGKLDRCPNCNQVCRRAQFQDL--CKNLLHC-RILRSCRCARICT*N- 236
V ++ C + +NG RC N R + C + C R + CAR T N
Sbjct: 661 VTMNGCARCVTMNG-CARCVTMNGCARCVTIYECARCVTMNGCARCVTMNGCARCVTMNG 719
Query: 235 CACCI*MNPI*RCATIVGRLC 173
CA C+ +N RC T+ G C
Sbjct: 720 CARCVTINGYPRCVTMNGCTC 740
>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
Length = 1223
Score = 31.5 bits (68), Expect = 0.70
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 286 VIDFCKGLEIAHDDILDCNWDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILM 465
V+ FC G +H D L C W S + Y+ + F +K+K D L +F T + ++
Sbjct: 702 VVKFCNGKSSSHVDPLQCFWLS-RDYYDGVVDFFLKKTKED--HLNVVFLTPRTRAMVIC 758
Query: 466 R 468
R
Sbjct: 759 R 759
>SB_55161| Best HMM Match : Kunitz_BPTI (HMM E-Value=6.3)
Length = 260
Score = 31.1 bits (67), Expect = 0.93
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = -3
Query: 349 CPNCNQVCRRAQFQDL--CKNLLHC-RILRSCRCARICT*N-CACCI*MNPI*RCATIVG 182
C N R D C + C R + CAR T N CA C+ MN RC T+ G
Sbjct: 183 CVTMNGCARCVTMNDCARCVTIYDCARCVTMNGCARCVTMNGCARCVTMNGYPRCVTMNG 242
Query: 181 RLC 173
C
Sbjct: 243 CTC 245
>SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1471
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +1
Query: 253 VHNDTNAKFYNVIDFCKG---LEIAHDDILDCNWDSDQVYHLN 372
+H++ N N F K L +A +LDC W + VYH N
Sbjct: 168 IHHNKNTDDNNNNSFVKKGELLNLAEQQLLDCTWSTPGVYHGN 210
>SB_40986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +1
Query: 253 VHNDTNAKFYNVIDFCKG---LEIAHDDILDCNWDSDQVYHLN 372
+H++ N N F K L +A +LDC W + VYH N
Sbjct: 44 IHHNKNTDDNNNNSFVKKGELLNLAEQQLLDCTWSTPGVYHGN 86
>SB_17743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -3
Query: 403 VWISACEK*FRLNGKLDRCPNCNQVCRRAQFQDLCKNLLHCRILRSCRCARICT*N-CAC 227
V ++ C +NG RC N C R + C R + CAR T N CA
Sbjct: 175 VTMNGCACCVTMNG-CSRCVTMNG-CARCVTMNGC-----ARCVTIYGCARCVTMNGCAR 227
Query: 226 CI*MNPI*RCATIVGRLC 173
C+ MN RC T+ G C
Sbjct: 228 CVTMNGCPRCVTMNGCTC 245
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 277 ILRSCRCARICT*NCACCI*MNPI*RCATIVG 182
+ R RC + CACC+ MN RC T+ G
Sbjct: 168 VTRKKRCVTMN--GCACCVTMNGCSRCVTMNG 197
>SB_48918| Best HMM Match : Transformer (HMM E-Value=2.6)
Length = 256
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1
Query: 693 SMLSXGVEFVQTQFKLLKPVAHIVLERFVGDHKFFAVCI 577
S+ S G + F L++PV+ + +R D+KF++ CI
Sbjct: 158 SLWSPGSASTHSVFILIRPVSTKMQKRLENDNKFYSACI 196
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +1
Query: 457 ILMRLNFDNKSNALLHL--QTEGERDDLRDKIESVLKHVKKLNTNSEKFMV--THETFKN 624
I+ +L+ ++ + A L Q + E+DDL+ K++ + K ++K N+E+ + T E K
Sbjct: 4261 IVQQLSIESDAPAAQTLVQQLQQEKDDLKSKLDQLKKTLQKSEANAEEALQRRTDELEKL 4320
Query: 625 DVGNRFEQFELRLNE 669
R Q +L L E
Sbjct: 4321 QSQTRSLQSQLELIE 4335
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 29.1 bits (62), Expect = 3.7
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = -3
Query: 397 ISACEK*FRLNGKLDRCPNCNQVCRRAQFQDLCKNLLHCRILRSCRCA-RICT*NCACCI 221
I C+ LNG RC VC + + + KN L C +L S C I NC+C I
Sbjct: 395 IDECDPNPCLNGATSRCTRPAIVCAIGRPRHMSKNFL-CYLLPSGTCVDGINGFNCSCFI 453
Query: 220 *MNPI*RCATIVGRLCGTFCS 158
RC T + C+
Sbjct: 454 GFTGE-RCETNIDDCVSNTCN 473
>SB_15426| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6)
Length = 224
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 259 CARICT*N-CACCI*MNPI*RCATIVG 182
CAR T N CA C+ MN RC TI G
Sbjct: 189 CARCVTMNGCARCVTMNGCARCVTIYG 215
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 277 ILRSCRCARICT*NCACCI*MNPI*RCATIVG 182
+ R RC + CACC+ MN RC T+ G
Sbjct: 168 VTRGKRCVTMN--GCACCVTMNGCARCVTMNG 197
>SB_2503| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6)
Length = 224
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 259 CARICT*N-CACCI*MNPI*RCATIVG 182
CAR T N CA C+ MN RC TI G
Sbjct: 189 CARCVTMNGCARCVTMNGCARCVTIYG 215
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 277 ILRSCRCARICT*NCACCI*MNPI*RCATIVG 182
+ R RC + CACC+ MN RC T+ G
Sbjct: 168 VTRGKRCVTMN--GCACCVTMNGCARCVTMNG 197
>SB_34049| Best HMM Match : PSI (HMM E-Value=2.6)
Length = 279
Score = 29.1 bits (62), Expect = 3.7
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -3
Query: 403 VWISACEK*FRLNGKLDRCPNCNQVCRRAQFQDLCKNLLHC-RILRSCRCARICT*N-CA 230
V ++ C + +NG RC N R C + C R + C R T N CA
Sbjct: 159 VTMNGCARCVIMNG-CARCVTMNGCAR-------CVTIYGCARCVTMNGCVRCVTMNGCA 210
Query: 229 CCI*MNPI*RCATIVGRLC 173
C+ MN RC T+ G C
Sbjct: 211 RCVTMNGCPRCVTMNGCTC 229
>SB_49235| Best HMM Match : Peptidase_C1 (HMM E-Value=7.5e-07)
Length = 122
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 307 LEIAHDDILDCNWDSDQVYHLN 372
L +A +LDC W + VYH N
Sbjct: 5 LNLAEQQLLDCTWSTPGVYHGN 26
>SB_17477| Best HMM Match : PSI (HMM E-Value=1.7)
Length = 206
Score = 28.7 bits (61), Expect = 4.9
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Frame = -3
Query: 403 VWISACEK*FRLNGKLDRCPNCNQV--CRRAQFQDLCKNLLHCRILRSC----RCARICT 242
V ++ C + +NG C C + C R + C + C CAR T
Sbjct: 121 VTMNGCARCVTMNG----CARCVTIYGCARCVTMNGCPRCVTMNGCARCVTIYGCARCVT 176
Query: 241 *N-CACCI*MNPI*RCATIVG 182
N C CC+ MN C TI G
Sbjct: 177 MNGCLCCVTMNGCTCCVTING 197
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 277 ILRSCRCARICT*NCACCI*MNPI*RCATIVG 182
+ R RC + CACC+ MN RC T+ G
Sbjct: 96 VTRGKRCVTMN--GCACCVTMNGCSRCVTMNG 125
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 259 CARICT*N-CACCI*MNPI*RCATIVG 182
C+R T N CA C+ MN RC TI G
Sbjct: 117 CSRCVTMNGCARCVTMNGCARCVTIYG 143
>SB_51097| Best HMM Match : Peptidase_C1 (HMM E-Value=9.3e-07)
Length = 122
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 307 LEIAHDDILDCNWDSDQVYHLN 372
L +A +LDC W + VYH N
Sbjct: 5 LNLAEQQLLDCTWSTPGVYHGN 26
>SB_19175| Best HMM Match : 7tm_1 (HMM E-Value=4.2e-05)
Length = 431
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Frame = +1
Query: 343 WDSDQVYH--LNEIIFHKQKSKRDLNSLGALFATK---QGLLKILMRLNFDNKSNA 495
W +D+ H L++I F + + +N + LF K +GLLKI R + D +SN+
Sbjct: 313 WTADKGDHSILDKIAFCGRFANSFINPIVYLFQMKDFREGLLKICRRTDLDGRSNS 368
>SB_45821| Best HMM Match : zf-B_box (HMM E-Value=1.1e-12)
Length = 379
Score = 28.3 bits (60), Expect = 6.5
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Frame = -3
Query: 478 QNLTASKFSTTPAWSRTMR-PT---S*DRVWISACEK*FRLNGKLDR--CPNCNQVCRRA 317
+NLT KF T P+ TM P D + S C+K + +G C C+ + R
Sbjct: 19 ENLT--KFITCPSCKETMNGPVLLPCLDSICRSCCQKTAQKHGDTWTVPCRLCDSLVRIP 76
Query: 316 QFQDLCKNLLHCRILRSCRC 257
Q DL N C + RC
Sbjct: 77 QTSDLKTNFFACNVNNYLRC 96
>SB_32308| Best HMM Match : MIF4G (HMM E-Value=1.5e-17)
Length = 605
Score = 28.3 bits (60), Expect = 6.5
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Frame = -3
Query: 478 QNLTASKFSTTPAWSRTMR-PT---S*DRVWISACEK*FRLNGKLDR--CPNCNQVCRRA 317
+NLT KF T P+ TM P D + S C+K + +G C C+ + R
Sbjct: 19 ENLT--KFITCPSCKETMNGPVLLPCLDSICRSCCQKTAQKHGDTWTVPCRLCDSLVRIP 76
Query: 316 QFQDLCKNLLHCRILRSCRC 257
Q DL N C + RC
Sbjct: 77 QTSDLKTNFFACNVNNYLRC 96
>SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06)
Length = 167
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -3
Query: 343 NCNQVCRRAQFQDLCKN--LLHCRILRSCRCARI--CT*NC 233
NC+QV + Q Q +C N L R+ + +C ++ C+ NC
Sbjct: 114 NCDQVVEQQQQQRMCANCGLAKIRLSKCGKCLKVYYCSRNC 154
>SB_53570| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 2064
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +1
Query: 331 LDCNWDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQ 510
L+ +WD + H N +I H R GA + T ++ N D +N + +Q
Sbjct: 655 LEISWDPPRPEHRNGLITHFTIKYRAKGQRGAKYLTVDATKTSVVLHNLDKFTNYFIWVQ 714
Query: 511 TEGERDD 531
++ D
Sbjct: 715 ASTKQGD 721
>SB_4274| Best HMM Match : LRV (HMM E-Value=5.7)
Length = 327
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +1
Query: 217 FKCNTHSFKYRYVHNDTNAKFYNVIDFCKGLEIAHDDILDCNWDSDQVY 363
F C KYRY D K+ +++ F + E W +D+VY
Sbjct: 93 FNCLIKELKYRYTKQDVEIKWKSLLKFYR-QEHEKAQHKPSGWGTDEVY 140
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,830,948
Number of Sequences: 59808
Number of extensions: 369646
Number of successful extensions: 1277
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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