Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19a09
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21450.1 68414.m02682 scarecrow-like transcription factor 1 (...    30   1.2  
At3g58720.1 68416.m06545 zinc finger (C3HC4-type RING finger) fa...    30   1.6  
At3g05675.2 68416.m00633 expressed protein                             30   1.6  
At3g05675.1 68416.m00632 expressed protein                             30   1.6  
At4g12610.1 68417.m01987 transcription initiation factor IIF alp...    29   2.8  
At4g02425.1 68417.m00328 expressed protein                             28   5.0  
At3g09140.1 68416.m01075 expressed protein contains Pfam profile...    28   6.6  
At2g03180.1 68415.m00271 hypothetical protein                          28   6.6  
At5g35603.1 68418.m04241 hypothetical protein                          27   8.7  
At2g03470.2 68415.m00306 myb family transcription factor / ELM2 ...    27   8.7  
At2g03470.1 68415.m00305 myb family transcription factor / ELM2 ...    27   8.7  

>At1g21450.1 68414.m02682 scarecrow-like transcription factor 1
           (SCL1) identical to scarecrow-like 1 GB:AAF21043
           GI:6644390 from [Arabidopsis thaliana]
          Length = 593

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/86 (24%), Positives = 40/86 (46%)
 Frame = +1

Query: 292 ITIVETDYNENVIIGYKGYYQAYAYNGGSLDPNTRVEESMKTLTVGKEDLLMWGIRQQCE 471
           +T+VE D N N    +  + +AY Y        + V ES+  +T+ +E      + +QC 
Sbjct: 458 VTVVEQDVNTNTSPFFPRFIEAYEY-------YSAVFESL-DMTLPRESQERMNVERQC- 508

Query: 472 VGEELIDRWGSDSEECFRDNEGRGQW 549
           +  ++++    + EE     E  G+W
Sbjct: 509 LARDIVNIVACEGEERIERYEAAGKW 534


>At3g58720.1 68416.m06545 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 238

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -3

Query: 354 LVVPLVANNHVFVVVRLHD---GDFHVLLQRFLGRGNVQ 247
           + +PL   N + V++R+HD   G+F + L+  LG G +Q
Sbjct: 1   MAIPLFQINPIIVMIRIHDRRVGEFLLSLRGMLGLGVIQ 39


>At3g05675.2 68416.m00633 expressed protein
          Length = 441

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/70 (24%), Positives = 28/70 (40%)
 Frame = +1

Query: 463 QCEVGEELIDRWGSDSEECFRDNEGRGQWVKGKELVKRQNNNHFAYHTCNKSWRCGVSTS 642
           Q E      DR  SD     R+ EGR  W+     +  + + +FA    +K   C +  S
Sbjct: 7   QAEASYTFGDRSSSDIVVRLRNEEGRDDWIYCHSKILSEKSQYFADRLSDKWPTCKILDS 66

Query: 643 KMYSRLECHD 672
           +    + C +
Sbjct: 67  RYCVEVICQE 76


>At3g05675.1 68416.m00632 expressed protein
          Length = 441

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/70 (24%), Positives = 28/70 (40%)
 Frame = +1

Query: 463 QCEVGEELIDRWGSDSEECFRDNEGRGQWVKGKELVKRQNNNHFAYHTCNKSWRCGVSTS 642
           Q E      DR  SD     R+ EGR  W+     +  + + +FA    +K   C +  S
Sbjct: 7   QAEASYTFGDRSSSDIVVRLRNEEGRDDWIYCHSKILSEKSQYFADRLSDKWPTCKILDS 66

Query: 643 KMYSRLECHD 672
           +    + C +
Sbjct: 67  RYCVEVICQE 76


>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
           subunit (TFIIF-alpha) family protein low similarity to
           SP|Q05913 Transcription initiation factor IIF, alpha
           subunit (TFIIF-alpha) (Transcription factor 5, large
           chain) (TF5A) {Drosophila melanogaster}; contains Pfam
           profile PF05793: Transcription initiation factor IIF,
           alpha subunit (TFIIF-alpha)
          Length = 543

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 628 RIATICCTCGTQSDCY--SAVSPTLCL*PTGRGLRCRENTLRCH 503
           ++ T C  CG+QSD Y  S    TLCL   GR +   +N  +CH
Sbjct: 6   QLNTSCVGCGSQSDLYGSSCRHMTLCL-KCGRTM--AQNKSKCH 46


>At4g02425.1 68417.m00328 expressed protein 
          Length = 262

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 524 RKHSSLSLPQRSINSSPTSHCCLI-PHMSKSSLPTVSVFMDSSTRVLGSS 378
           R+ +S S+  RS + S T  CC I  H + S LP  +V  DSS  + G +
Sbjct: 100 RRRNSRSVSGRSSDRSGTRRCCSIGAHGTCSDLP-FAVGTDSSGELFGEA 148


>At3g09140.1 68416.m01075 expressed protein contains Pfam profile
           PF05056: Protein of unknown function (DUF674);
           expression supported by MPSS
          Length = 473

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 614 LLHVWYAK*L--LFCRFTNSLPLTHWPRPSLSRKHSSLSLPQRSINSSPT 471
           LLHV  ++ L  L C FT+ LPLT     +  +K SSL + +  I  SPT
Sbjct: 220 LLHVGVSEVLTLLECFFTSDLPLT----DTFLKKQSSLQMIRSRIPLSPT 265


>At2g03180.1 68415.m00271 hypothetical protein
          Length = 120

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 483 LFAHLALLPDTPHEQIFFAHSQRFHGFFDACVGIQRASVVRIR 355
           +F   A +  +   +I FAH  R H F D  V I  +S  RI+
Sbjct: 3   IFKEFAKIKKSVEAKIGFAHKDRLHKFLDHHVVIDGSSEQRIQ 45


>At5g35603.1 68418.m04241 hypothetical protein
          Length = 160

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 277 QKDVEITIVETDYNENVIIGYKGYYQAYAYNGGSLDPNTRVEESM 411
           +K++ +   + DY  +V +  +  + A  Y+G  +D N R  ESM
Sbjct: 84  RKELRLCRKDPDYAPDVPLRLRSSFGACEYSGRDMDFNLRCSESM 128


>At2g03470.2 68415.m00306 myb family transcription factor / ELM2
           domain-containing protein contains Pfam profile: PF00249
           Myb-like DNA-binding domain; contains Pfam profile:
           PF01448 ELM2 domain
          Length = 449

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 421 TVGKEDLLMWGIRQQCEVGEELIDRWGSDSEECF 522
           T+G E  +  G+   CE+GEE+   W  + E+ F
Sbjct: 204 TIGYERFMELGL---CEMGEEVASLWTEEEEDLF 234


>At2g03470.1 68415.m00305 myb family transcription factor / ELM2
           domain-containing protein contains Pfam profile: PF00249
           Myb-like DNA-binding domain; contains Pfam profile:
           PF01448 ELM2 domain
          Length = 450

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 421 TVGKEDLLMWGIRQQCEVGEELIDRWGSDSEECF 522
           T+G E  +  G+   CE+GEE+   W  + E+ F
Sbjct: 205 TIGYERFMELGL---CEMGEEVASLWTEEEEDLF 235


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,390,999
Number of Sequences: 28952
Number of extensions: 299671
Number of successful extensions: 964
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)