Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19a08
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0214 + 14355436-14355473,14355584-14355596,14355695-143558...    31   0.62 
06_03_0723 + 23875008-23875204,23875311-23875576,23877166-238772...    29   2.5  
02_03_0197 - 16249988-16250509                                         29   3.3  
11_05_0033 + 18500092-18501372,18502419-18502826,18502948-185029...    29   4.4  
03_05_0457 - 24506420-24506974,24507142-24508329,24509262-245093...    28   5.8  
11_06_0248 + 21680237-21680392,21680450-21681141,21681397-216817...    28   7.7  
02_02_0155 + 7272563-7272630,7272934-7273031,7273491-7274057,727...    28   7.7  

>08_02_0214 +
           14355436-14355473,14355584-14355596,14355695-14355804,
           14355975-14356072,14356167-14356331,14356553-14356664,
           14357217-14357751,14357868-14357965,14358084-14359203
          Length = 762

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = -2

Query: 414 IVNTMLGSDASWKVMRDFCEETVRMYVLDPVGCGLSAL-QHFNTPPR--SIVSSCPWVSH 244
           +++   G DA    +  F +E V +  L     G+S +    N+ P   ++V++ PWV+ 
Sbjct: 275 VISVSFGQDAPVATVASFLQEPVTLGSLHAAMNGVSVVCSAGNSGPLEDTVVNAAPWVTT 334

Query: 243 ASSCSVDRGNP 211
            ++ +VDR  P
Sbjct: 335 VAASTVDRDFP 345


>06_03_0723 +
           23875008-23875204,23875311-23875576,23877166-23877274,
           23877577-23878212,23878328-23878573,23878669-23878834,
           23878863-23879076,23879580-23880097,23880617-23880683,
           23882131-23882215,23882292-23882367,23882593-23882756,
           23883088-23883217,23883314-23883430,23883505-23883600,
           23883732-23884009,23886571-23886794,23886935-23887011,
           23887103-23887145,23887231-23887288,23888371-23888410,
           23888891-23889418
          Length = 1444

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/71 (19%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = -2

Query: 414 IVNTMLGSDASWKVMRDFCEETVRMYVLDPVGCGLSAL---QHFNTPPRSIVSSCPWVSH 244
           +++  +G+D +     D+ E+ + +  L  V  G++ +    +F   P ++ +  PW+  
Sbjct: 294 VISASVGADPN-----DYLEDAIAIGALHAVKAGITVVCSASNFGPDPGTVTNVAPWILT 348

Query: 243 ASSCSVDRGNP 211
            ++ ++DR  P
Sbjct: 349 VAASTMDRAFP 359


>02_03_0197 - 16249988-16250509
          Length = 173

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 376 LPGRVAAKHRIHD-GQQRQVLSHNRDDSSKRNKR 474
           +PGR +  HR HD G+  Q+L   R+ S++R  R
Sbjct: 30  MPGRESRSHRQHDVGEGGQLLPPRREGSNRRRCR 63


>11_05_0033 +
           18500092-18501372,18502419-18502826,18502948-18502990,
           18503236-18503282,18504582-18505901
          Length = 1032

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 312 GHSLQGPGRTFVLSLRRSHASPSRTRRCQASYSRWSAATGS 434
           G S   P +  +L  RR+HA+P+ T +  A+ + W  A G+
Sbjct: 819 GRSSAFPPKARLLQQRRAHAAPTFTIKRLAAEAAWMPAIGN 859


>03_05_0457 -
           24506420-24506974,24507142-24508329,24509262-24509331,
           24510627-24510704,24511088-24511149
          Length = 650

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 254 QGQLETMDLGGVLKCCKALRPQPTGSRTYIRTVSSQKSRITFQDASLPSIVFTM 415
           +G   T  L G+L+    L+  PT      + +  Q    T +D  LP+  +TM
Sbjct: 319 KGLASTRVLLGLLRTAMILKASPTCISNLEKRIGMQLDHATLEDLLLPNFSYTM 372


>11_06_0248 +
           21680237-21680392,21680450-21681141,21681397-21681724,
           21681945-21682801,21682928-21683378,21683761-21684066,
           21684136-21684456,21684539-21684745,21685568-21685810
          Length = 1186

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +1

Query: 22  LAKVRVSNNVRFEPHELTYLPRYAEIVSQDHQLRHQLSVPFFRSGAETEHT 174
           LAK+++   + + P ++ YLPR  +++     L  + ++P F    ++ HT
Sbjct: 545 LAKLKIEARLSYVPSDIFYLPRLQQLI-----LPSETTLPHFTEPMKSLHT 590


>02_02_0155 +
           7272563-7272630,7272934-7273031,7273491-7274057,
           7275121-7276085,7276201-7276388,7276497-7276938
          Length = 775

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 104 LKTISLGISYQCLFFGLGPKPNTRGM*GIVFRAGVKGLPRSTLQLDAWL 250
           L TIS+ I + C   G GP PN   +   +F   V+G+  +   L  W+
Sbjct: 662 LSTISVIIYFCCFVMGFGPIPNI--LCAEIFPTRVRGICIAICALTFWI 708


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,475,009
Number of Sequences: 37544
Number of extensions: 396189
Number of successful extensions: 1171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)