Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19a08
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)                   32   0.48 
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_36010| Best HMM Match : Remorin_C (HMM E-Value=6.1)                 29   4.5  
SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)                   29   4.5  
SB_34340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_2462| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)
          Length = 2008

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
 Frame = +2

Query: 224  STLQLDAWLTQGQLETMDLGGVLKC---CKALRPQPTGSRTYI-RTVS---SQKSRITFQ 382
            S L+L A +T   LET    GV  C   C+       GS T + +T+S   S  SR+  +
Sbjct: 973  SELRLQAQVTDLDLET----GVPNCTWACQTSTGATCGSATRVGQTISPASSCDSRVPCE 1028

Query: 383  DASL-PSIVFTMVSSDRFSPTTATTQVNVTKGN 478
            +  +  + +FT+ +  R   TTA TQ+ V  G+
Sbjct: 1029 EFRVGTTYIFTVTAMKRSRTTTAQTQIKVVSGS 1061


>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +3

Query: 348 LSLRRSHASPSRTRRCQASYSRWSAATGSLPQPRR 452
           L  R SH S SR     ++ SR S++ GS+P+PRR
Sbjct: 344 LITRPSHCS-SRVSPAPSNTSRRSSSRGSVPRPRR 377


>SB_36010| Best HMM Match : Remorin_C (HMM E-Value=6.1)
          Length = 183

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +3

Query: 348 LSLRRSHASPSRTRRCQASYSRWSAATGSLPQPRR 452
           L  R SH S SR     ++ SR S++ GS+P+PRR
Sbjct: 84  LITRPSHCS-SRVSPAPSNTSRRSSSRGSVPRPRR 117


>SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)
          Length = 1389

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 231  SVDRGNPFTPALNTIPYIPRVFGFG--PRPKK 142
            S+   NP  P +NT+   P   GFG  P+PKK
Sbjct: 1341 SIKSENPLFPIINTLTPQPACTGFGKYPQPKK 1372


>SB_34340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -2

Query: 393 SDASWKVMRDFCEETVRMYVLDPVGCGLSALQHFNTPPRSIVSSCPWVSHASSCSV 226
           S A + V    C  +   YV+    C +S+ Q+  +  + +VSS  +V  ++ C V
Sbjct: 118 SSAQYVVCSAQCVVSSAQYVVSSAQCVVSSAQYVVSSAQCVVSSAQYVVSSAQCVV 173


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 636 RQLTTEEIEQYWTHWKNIFPAEKDRFWDGL 547
           +QL+ E+I+ + + +  + P EKD  WD L
Sbjct: 19  KQLSLEDIDGFNSRFLFVCPPEKDPLWDDL 48


>SB_2462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 351 TVRMYVLDPVG-CGLSALQHFNTPPRSIVSSCP-WV 250
           +V  Y L+ VG CG+  L  +N PPR   +  P WV
Sbjct: 17  SVNTYSLNKVGSCGIGLLTEYNIPPRKGPTVKPSWV 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,987,666
Number of Sequences: 59808
Number of extensions: 446616
Number of successful extensions: 1181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)