Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19a06
         (520 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)       86   2e-17
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)       86   2e-17
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)       86   2e-17
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)       82   2e-16
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)...    81   6e-16
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)...    81   6e-16
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)...    73   2e-13
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)...    69   1e-12
At3g63200.1 68416.m07100 patatin-related low similarity to patat...    31   0.47 
At1g67140.1 68414.m07638 expressed protein                             30   1.1  
At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containi...    29   2.5  
At4g29880.1 68417.m04252 leucine-rich repeat family protein cont...    27   5.7  

>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 39/70 (55%), Positives = 55/70 (78%)
 Frame = +1

Query: 79  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 258
           M+ VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 259 KLSSMPVGGG 288
           KL+S+P GGG
Sbjct: 61  KLASVPSGGG 70


>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 39/70 (55%), Positives = 55/70 (78%)
 Frame = +1

Query: 79  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 258
           M+ VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 259 KLSSMPVGGG 288
           KL+S+P GGG
Sbjct: 61  KLASVPSGGG 70


>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 39/70 (55%), Positives = 55/70 (78%)
 Frame = +1

Query: 79  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 258
           M+ VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 259 KLSSMPVGGG 288
           KL+S+P GGG
Sbjct: 61  KLASVPSGGG 70


>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
          Length = 115

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 37/70 (52%), Positives = 53/70 (75%)
 Frame = +1

Query: 79  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 258
           M+ VAA+LLAVL GK +P   D++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 259 KLSSMPVGGG 288
           KL+S+P GGG
Sbjct: 61  KLASVPSGGG 70


>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 80.6 bits (190), Expect = 6e-16
 Identities = 34/70 (48%), Positives = 54/70 (77%)
 Frame = +1

Query: 79  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 258
           M+  AA+LLAVLGG   P+A +++ I+ +VG + D E ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 259 KLSSMPVGGG 288
           KL+S+P GGG
Sbjct: 61  KLASVPSGGG 70


>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 80.6 bits (190), Expect = 6e-16
 Identities = 34/70 (48%), Positives = 54/70 (77%)
 Frame = +1

Query: 79  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 258
           M+  AA+LLAVLGG   P+A +++ I+ +VG + D E ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 259 KLSSMPVGGG 288
           KL+S+P GGG
Sbjct: 61  KLASVPSGGG 70


>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
           acidic ribosomal protein P2, Parthenium
           argentatum,SWISSPROT:RLA2_PARAR
          Length = 114

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 34/70 (48%), Positives = 48/70 (68%)
 Frame = +1

Query: 79  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 258
           M+ VAAYLLA L G   P+ AD++KI+ SVG E D EK+    + +  +DV +LIA GRE
Sbjct: 1   MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 259 KLSSMPVGGG 288
           K++++  GGG
Sbjct: 61  KMAALSSGGG 70


>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
           similar to acidic ribosomal protein P2b (rpp2b)
           GB:U62753 GI:2431770 from [Zea mays]
          Length = 115

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 33/69 (47%), Positives = 47/69 (68%)
 Frame = +1

Query: 79  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 258
           M+ +AA+LLA LGG   P + D++KIL SVG E D  K+  + + +   DV +LIAAGRE
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 259 KLSSMPVGG 285
           K+S++  GG
Sbjct: 61  KMSALSSGG 69


>At3g63200.1 68416.m07100 patatin-related low similarity to
           patatin-like latex protein allergen Hev b 7 - Hevea
           brasiliensis, EMBL:AF113546; contains patatin domain
           PF01734
          Length = 384

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
 Frame = +1

Query: 148 EKILSSVGIEADAEKLKKVITELNGKDVE----QLIAAGREKLSSMP 276
           E++L   G+E     +K+++TE NG+ +E    +L+A+G+  L   P
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 264  QLLTSGRNKLFNILAVELSDYFLKLLSVSFDTDGAEDLLNVS 139
            Q L++GR      L+++L    L++LS SF  D + D+L VS
Sbjct: 1403 QSLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDILAVS 1444


>At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containing
           protein low similarity to CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 510

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 136 AADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLS 267
           A+ VE  +S+     DAE++ K++T+     VE L+     KLS
Sbjct: 50  ASSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLS 93


>At4g29880.1 68417.m04252 leucine-rich repeat family protein
           contains leucine rich repeats, Pfam:PF00560
          Length = 404

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = -2

Query: 273 H*RQLLTSGRNKLFNILAVELSDYFLKLLSVSFDTDGAEDLLNVSGSWRSLATQHSQ*IR 94
           H +++  S   +L N++A+++    +K L  S        +LNVSG++     Q  Q  R
Sbjct: 87  HIKKIPESLTARLLNLIALDIHSNQIKALPNSIGCLSKLKILNVSGNFLVSLPQTIQNCR 146

Query: 93  GHVTHFLSPN 64
            H +    PN
Sbjct: 147 FHTSTKSGPN 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,024,796
Number of Sequences: 28952
Number of extensions: 118182
Number of successful extensions: 346
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)