Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19a05
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0912 - 21520088-21520426,21520534-21520674,21521235-215212...    35   0.022
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    33   0.12 
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510...    29   1.1  
10_06_0191 - 11631066-11631538,11632011-11632319,11632374-11632572     29   1.9  
06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-63...    28   2.5  
08_02_0801 + 21349434-21349438,21349952-21349978,21351175-213512...    28   3.3  
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910...    28   3.3  
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59...    27   5.7  
11_05_0041 - 18545731-18545745,18545770-18545919                       27   7.6  

>10_08_0912 -
           21520088-21520426,21520534-21520674,21521235-21521294,
           21521394-21521493,21521591-21521904,21522253-21522621,
           21522993-21523104,21523627-21523787
          Length = 531

 Score = 35.1 bits (77), Expect = 0.022
 Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
 Frame = +1

Query: 55  GDDDATRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTL 234
           G+ + T L  SN      ++++ A++NH     YAIT    LL +    + ++ +  N  
Sbjct: 282 GNGEDTNL--SNTKCTVEVSSISADKNHMPDVSYAITHY-RLLVEQLERVDLSMSETNIK 338

Query: 235 INFEINVFGKSLLLSKFVNFCIANSD--GVTIQHKMLTNVLSFLLEK 369
           + F INV+  SL++  ++ + I NS    + + HK   ++LS  + K
Sbjct: 339 LAFWINVY-NSLVMHAYLAYGIPNSSLKRMALFHKWFESILSTAMRK 384


>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = -3

Query: 299 MQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTNV 162
           +  L+NL+   L  N L S+L+ +L KLH+ +  KL++ S + T +
Sbjct: 861 ISSLSNLVRLSLRENYLESELVKILGKLHSLLSLKLYVNSYLGTEL 906


>04_04_1696 + 35448667-35449641,35449726-35450562,35450667-35451001,
            35451371-35451497,35451594-35451752,35451872-35453053,
            35453164-35453424,35453513-35453761
          Length = 1374

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/48 (27%), Positives = 30/48 (62%)
 Frame = +1

Query: 217  NLINTLINFEINVFGKSLLLSKFVNFCIANSDGVTIQHKMLTNVLSFL 360
            +L+++L++ E++V GKS L  K+   C+  +   T++ K   + L+++
Sbjct: 1086 SLLSSLLHPEVSVNGKSSLKGKYSVICVHANQFYTLRKKCCPSELAYI 1133


>10_06_0191 - 11631066-11631538,11632011-11632319,11632374-11632572
          Length = 326

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
 Frame = +1

Query: 175 TLLFKNNLNLMVACNLINTLINFEINVFGKSLLLSKFVNFCIANSD-----GVTIQHKML 339
           T ++++ L+++V   L+N +  +   + G +++ ++F ++C A        G+ ++H+  
Sbjct: 162 TTIYRSKLSMIVLEKLLNKICRYVRIIAGNTVVKARFQDYCKAKKKPARMFGIDVKHRWN 221

Query: 340 TNVLSFLLEKYY*K*INLF 396
           T  L     K Y + I +F
Sbjct: 222 TMYLLLRQLKGYEELIYVF 240


>06_01_0078 -
           628946-629524,629620-629684,629814-629935,630042-630129,
           630508-630819,630908-632189,632296-632784
          Length = 978

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 238 NFEINVFGKSLLLSKFVN-FCIANSDGVTIQHKMLTNVLSF 357
           N  I+V+G+   L K V  F  A   G+ I  K  TN+LSF
Sbjct: 720 NIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKTYTNMLSF 760


>08_02_0801 +
           21349434-21349438,21349952-21349978,21351175-21351249,
           21351333-21351369,21351469-21351552,21351821-21351881,
           21351961-21352067,21352162-21352227,21352366-21352461
          Length = 185

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 133 NHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFE 246
           N   FY YA  +  T   K  + + VAC L+N ++  +
Sbjct: 82  NFQDFYPYAFRYCLTEDKKKCIEIPVACELLNLVLGLQ 119


>03_03_0226 +
           15590276-15590469,15590515-15590539,15590865-15591014,
           15591166-15591594
          Length = 265

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +1

Query: 133 NHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEINVFG--KSLLLSKFVNFCIAN 306
           +H    EYAI ++  +  K  L+  V C  ++  I   ++  G     L +K  +   + 
Sbjct: 55  DHMMSNEYAIRYIRHVFTKEQLSTRVGCGRVHPTIENILDKCGVVAPNLPTKIDDLSHST 114

Query: 307 SDGVTIQHKMLTNVLSFLLE 366
             G T + K++  +L  +LE
Sbjct: 115 GHGWTTREKVIKRLLLMVLE 134


>01_01_0078 +
           587975-588179,588506-588606,589087-589167,589240-590178,
           590388-590542,590837-590902,590963-591023,591659-591853,
           591939-592049,592116-592280
          Length = 692

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +1

Query: 190 NNLNLMVACNLINTLINFEINVFGKSLLLSKFVNFCIANSDGV--TIQHKMLTNVLSFLL 363
           +++++ +    I   INFEI ++G S +  + V+  I  +  V      + LT VL FLL
Sbjct: 469 HSISVHILVEFIIARINFEIMIYGSSTM--ELVHTAITTTGAVEEVEAARSLTIVLQFLL 526

Query: 364 EKYY*K*INLFSK 402
              +   + +FS+
Sbjct: 527 SLVFAAPLAIFSQ 539


>11_05_0041 - 18545731-18545745,18545770-18545919
          Length = 54

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 292 FCIANSDGVTIQHKMLTNVLSFLLEKY 372
           FC+ NSD +T     +  +  FL+ KY
Sbjct: 23  FCVTNSDHLTNLKDKMKKICEFLITKY 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,305,399
Number of Sequences: 37544
Number of extensions: 130990
Number of successful extensions: 259
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)