Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19a03
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    32   0.092
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    31   0.21 
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   2.6  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 31.9 bits (69), Expect = 0.092
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 142 NSTITNWNCKFVQYYDCILYFYNHKFRHDYTIKNINYNKQYLIYS 8
           N++  NW C  ++ +   ++     FR  Y + NI + K   +YS
Sbjct: 183 NTSENNWTCLSIENFGISIHVITKNFREYYKLDNIEHVKDETLYS 227


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
 Frame = -1

Query: 599  NGIPIRGSPHSIASSDVYSPAWVITSFTFGCLKTSACGNHRPVLTFSGIPSTTSRSHFHS 420
            N +P   SPHS + SD  SPA V  S + G         H    T S + +T S +   S
Sbjct: 3679 NKVPSTVSPHSSSISDTKSPATVTISSSSGQF------THSTFSTGSTMHNTVSHATSTS 3732

Query: 419  TLYGSSR---NTLANICVS*RGSFEGGTFVPKL 330
            + + +S    NTLA+   + +  F   + VP L
Sbjct: 3733 SSFTTSHLPTNTLASTFDNSQSIFSSSSGVPGL 3765


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 559  EAIECGLPLIGIPFLADQWLNVDNYVHHGMGLYLDA 666
            +AI C L  + +PF  D+    + Y    M LY  A
Sbjct: 1141 KAILCNLMALSLPFTQDKLFKANVYFDFAMNLYASA 1176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,017
Number of Sequences: 5004
Number of extensions: 59997
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)