Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19a03
(704 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44571| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 2e-17
SB_9495| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 4e-16
SB_26422| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 5e-16
SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 2e-15
SB_17368| Best HMM Match : Glyco_tran_28_C (HMM E-Value=1.3) 76 2e-14
SB_44570| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 6e-14
SB_24817| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_44502| Best HMM Match : UDPGT (HMM E-Value=2e-05) 69 4e-12
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004) 49 4e-06
SB_22264| Best HMM Match : UDPGT (HMM E-Value=6.4e-11) 49 4e-06
SB_10291| Best HMM Match : Ataxin-2_N (HMM E-Value=8) 31 0.91
SB_25084| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_35265| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2) 28 6.4
SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_53752| Best HMM Match : TSP_1 (HMM E-Value=8.5e-11) 28 8.5
>SB_44571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 86.2 bits (204), Expect = 2e-17
Identities = 46/135 (34%), Positives = 75/135 (55%)
Frame = +1
Query: 298 LDSSDTGVIYMSFGTNVPPSKLPRQLTQMFASVFRELPYKVLWKWDLDVVEGMPENVKTG 477
+DSSD GV+ +SFG+N+ S LPR+ + A F +L V W+ + + N+KT
Sbjct: 178 IDSSD-GVVIVSFGSNIL-SSLPRKDIDVLAEAFGQLKETVFWRIKGYIPANLSPNIKTV 235
Query: 478 RWFPQADVFRHPNVKLVITQAGL*TSEEAIECGLPLIGIPFLADQWLNVDNYVHHGMGLY 657
W PQ D+ + +++++ G + E+ G+PL+G+P ADQ+ N G+GL
Sbjct: 236 EWLPQNDLLANQKTRVLVSHLGQNSLYESSYHGIPLVGVPLCADQFDNAVLAEDRGLGLS 295
Query: 658 LDAETVTAEEFKAAI 702
+D TVTA++ I
Sbjct: 296 VDINTVTADQLYRTI 310
>SB_9495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 82.2 bits (194), Expect = 4e-16
Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Frame = +1
Query: 283 DLQAYLDSS-DTGVIYMSFGTNVPPSKLPRQLTQMFASVFRELPYKVLWKWDL-DVVEGM 456
DL+ ++ S D GV+ +SF T + + + + +S FR++ +KVLWK D +
Sbjct: 414 DLENFMHGSGDEGVVLVSFSTYM--DDMNQNVLDRLSSAFRKISHKVLWKVDEGSYPNSV 471
Query: 457 PENVKTGRWFPQADVFRHPNVKLVITQAGL*TSEEAIECGLPLIGIPFLADQWLNVDNYV 636
+NVK W PQ D+ H +L IT AG EA G+P++ +P DQ N
Sbjct: 472 SDNVKLVEWMPQNDILGHNKTRLFITHAGAHGMAEAGYHGVPVVAMPIFTDQPDNARMLS 531
Query: 637 HHGMGLYLDAETVTAEEFKAAI 702
GMG+ LD T T+E+ +A+
Sbjct: 532 DVGMGVVLDINTATSEDVISAV 553
>SB_26422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 536
Score = 81.8 bits (193), Expect = 5e-16
Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Frame = +1
Query: 301 DSSDTGVIYMSFGTNVPPSKLPRQLTQMFASVFRELPYKVLWK-WDLDVVEGMPENVKTG 477
+S + GVI +SFGT + + L + +M + F +LP+K++W+ + + + + +NVK
Sbjct: 306 ESGEKGVILVSFGTAI--NTLDPAVIEMMSKAFAQLPHKIIWRVYPGNYPKSVSDNVKLV 363
Query: 478 RWFPQADVFRHPNVKLVITQAGL*TSEEAIECGLPLIGIPFLADQWLNVDNYVHHGMGLY 657
W PQ D+ H N KL I G E G+P++ PF ADQ N + + GMG
Sbjct: 364 EWVPQNDILGHNNTKLFINHGGANGMAETAYHGVPVVCSPFFADQPDNSNLLKNAGMGEI 423
Query: 658 LDAETVTAEE 687
+ T TAEE
Sbjct: 424 VRVNTATAEE 433
>SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 79.8 bits (188), Expect = 2e-15
Identities = 46/143 (32%), Positives = 73/143 (51%)
Frame = +1
Query: 274 VSWDLQAYLDSSDTGVIYMSFGTNVPPSKLPRQLTQMFASVFRELPYKVLWKWDLDVVEG 453
+S + Q + SD GVI +SFG+NV + + + + F L V W+ +
Sbjct: 238 LSSEFQQIVKKSD-GVIIVSFGSNV--AAIANKEVDVLTEAFGRLKETVFWRQKGYIPAN 294
Query: 454 MPENVKTGRWFPQADVFRHPNVKLVITQAGL*TSEEAIECGLPLIGIPFLADQWLNVDNY 633
+ N+KT W PQ D+ + +L ++ G + E+ G+PL+G+P DQ+ N
Sbjct: 295 LSPNIKTVEWLPQNDLLANEKTRLFVSHLGQNSLYESGYRGIPLVGVPLWGDQFDNAVLV 354
Query: 634 VHHGMGLYLDAETVTAEEFKAAI 702
G+GL +D TVTA+EF AI
Sbjct: 355 KDKGLGLVVDIHTVTADEFYRAI 377
>SB_17368| Best HMM Match : Glyco_tran_28_C (HMM E-Value=1.3)
Length = 157
Score = 76.2 bits (179), Expect = 2e-14
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 3/143 (2%)
Frame = +1
Query: 283 DLQAYLD-SSDTGVIYMSFGTNVPPSKLPRQLTQMFASVFRELPYKVLWKWDLDVV--EG 453
+L+A++ S D GVI +SFG+ + L M F ++P VL K DL+ + +
Sbjct: 9 ELEAFMQRSGDEGVILLSFGSMI--EGLHNDTMLMMLKAFSQMPQNVLVKLDLNGLPKDS 66
Query: 454 MPENVKTGRWFPQADVFRHPNVKLVITQAGL*TSEEAIECGLPLIGIPFLADQWLNVDNY 633
+P NV+ +W PQ DV H KL IT AG E+ G+P+I +P DQ+ N
Sbjct: 67 VPPNVRAVKWLPQNDVLGHSKTKLFITHAGANGLAESAYHGVPMICVPIFGDQFDNSQLA 126
Query: 634 VHHGMGLYLDAETVTAEEFKAAI 702
G+ + +TA++F + +
Sbjct: 127 KDIGIAEMIKVNDMTADQFVSTL 149
>SB_44570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 74.9 bits (176), Expect = 6e-14
Identities = 45/149 (30%), Positives = 74/149 (49%)
Frame = +1
Query: 256 RNGNANVSWDLQAYLDSSDTGVIYMSFGTNVPPSKLPRQLTQMFASVFRELPYKVLWKWD 435
+NG + + Q ++ SD GVI +SFG+N+ + + + + A F L V W+
Sbjct: 40 QNGVKEI-FKFQQIVNKSD-GVIIVSFGSNI--AAIADKEVDVLAEAFGRLKETVFWRQK 95
Query: 436 LDVVEGMPENVKTGRWFPQADVFRHPNVKLVITQAGL*TSEEAIECGLPLIGIPFLADQW 615
+ + N+KT W PQ D+ + ++ ++ G + EA G+PL+G+P DQ
Sbjct: 96 GYIPANLSPNIKTVEWLPQNDLLANEKTRVFVSHLGQNSLYEAGYHGIPLVGVPLFGDQS 155
Query: 616 LNVDNYVHHGMGLYLDAETVTAEEFKAAI 702
N G+GL +D TVTA+E I
Sbjct: 156 ENAVLVEDKGLGLAVDIHTVTADELYRTI 184
Score = 71.7 bits (168), Expect = 5e-13
Identities = 43/143 (30%), Positives = 72/143 (50%)
Frame = +1
Query: 274 VSWDLQAYLDSSDTGVIYMSFGTNVPPSKLPRQLTQMFASVFRELPYKVLWKWDLDVVEG 453
+S + Q ++ SD GVI +SFG+N + + + + A F L V+W+ +
Sbjct: 450 LSPEFQHIVNKSD-GVIVVSFGSNF--AAIADKEVDVLARAFGRLKETVIWRQKGYIPAN 506
Query: 454 MPENVKTGRWFPQADVFRHPNVKLVITQAGL*TSEEAIECGLPLIGIPFLADQWLNVDNY 633
+ N+KT W PQ D+ + ++ ++ G + EA G+PL+G+P DQ N
Sbjct: 507 LSPNIKTVEWLPQNDLLANEKTRVFVSHLGQNSLYEAGYHGIPLVGVPLFGDQPDNAVLV 566
Query: 634 VHHGMGLYLDAETVTAEEFKAAI 702
G+GL +D TVTA++ I
Sbjct: 567 EDKGLGLAVDIHTVTADKLYRTI 589
>SB_24817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 72.9 bits (171), Expect = 2e-13
Identities = 41/140 (29%), Positives = 70/140 (50%)
Frame = +1
Query: 283 DLQAYLDSSDTGVIYMSFGTNVPPSKLPRQLTQMFASVFRELPYKVLWKWDLDVVEGMPE 462
+ Q +D+S+ GVI +SFG+NV + + + + F L V W+ + +
Sbjct: 320 EFQQLVDNSE-GVIIVSFGSNV--AAIANKEVDVMVEAFGRLKETVFWRQRGYIPSNLSN 376
Query: 463 NVKTGRWFPQADVFRHPNVKLVITQAGL*TSEEAIECGLPLIGIPFLADQWLNVDNYVHH 642
N+K W PQ D+ + ++ ++ GL + E+ G+P++G+P DQ N
Sbjct: 377 NIKIVEWLPQNDLLANKKTRVFVSHLGLNSLYESGYHGIPVVGVPIYGDQPDNAVLMEEK 436
Query: 643 GMGLYLDAETVTAEEFKAAI 702
G+GL +D TVTA+E I
Sbjct: 437 GLGLAVDIHTVTADELYRTI 456
>SB_44502| Best HMM Match : UDPGT (HMM E-Value=2e-05)
Length = 261
Score = 68.9 bits (161), Expect = 4e-12
Identities = 42/135 (31%), Positives = 71/135 (52%)
Frame = +1
Query: 283 DLQAYLDSSDTGVIYMSFGTNVPPSKLPRQLTQMFASVFRELPYKVLWKWDLDVVEGMPE 462
+ + ++ S++ GV+ +SFG+ V L + A+VF +L YKV+ K+ + +
Sbjct: 26 EFEDFIASAEHGVVLVSFGSMV--MSLDDAVVSKLANVFSKLKYKVIIKFGDSFPK--TD 81
Query: 463 NVKTGRWFPQADVFRHPNVKLVITQAGL*TSEEAIECGLPLIGIPFLADQWLNVDNYVHH 642
NV +W PQ D+ + NVKL IT G + E G+PL+ P +DQ+ +
Sbjct: 82 NVMLVKWMPQNDILANSNVKLFITHGGANSVYEGCGHGVPLLVTPLFSDQFGYGEKVKAA 141
Query: 643 GMGLYLDAETVTAEE 687
G+G+ + + TAEE
Sbjct: 142 GLGISVSLKESTAEE 156
>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
Length = 969
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/78 (32%), Positives = 38/78 (48%)
Frame = +1
Query: 454 MPENVKTGRWFPQADVFRHPNVKLVITQAGL*TSEEAIECGLPLIGIPFLADQWLNVDNY 633
+P NV+T +W PQ D+ H KL IT AG E+ G+P+I +P D N
Sbjct: 112 IPSNVRTVKWLPQNDLLGHSKTKLFITHAGANGLAESAYHGVPMICVPLFGDHNQNAQVA 171
Query: 634 VHHGMGLYLDAETVTAEE 687
G+ + +TA++
Sbjct: 172 KDVGIAEVVMLSDITADQ 189
>SB_22264| Best HMM Match : UDPGT (HMM E-Value=6.4e-11)
Length = 385
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/78 (32%), Positives = 38/78 (48%)
Frame = +1
Query: 454 MPENVKTGRWFPQADVFRHPNVKLVITQAGL*TSEEAIECGLPLIGIPFLADQWLNVDNY 633
+P NV+T +W PQ D+ H KL IT AG E+ G+P+I +P D N
Sbjct: 202 IPSNVRTVKWLPQNDLLGHSKTKLFITHAGANGLAESAYHGVPMICVPLFGDHNQNAQVA 261
Query: 634 VHHGMGLYLDAETVTAEE 687
G+ + +TA++
Sbjct: 262 KDVGIAEVVMLSDITADQ 279
>SB_10291| Best HMM Match : Ataxin-2_N (HMM E-Value=8)
Length = 266
Score = 31.1 bits (67), Expect = 0.91
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 142 NSTITNWNCKFVQYYDCILYFYNHKFRHDYTIKNINYNKQY 20
N+ T +N ++ Y+ YN ++ DYT N YN +Y
Sbjct: 36 NTDYTEYNTEYNTEYNTKYTVYNTEYNTDYTEYNTEYNTEY 76
>SB_25084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = -3
Query: 510 MSEDISLREP-PSGLDVLRHPLHHVEVP--LPQHLVRQLTEYAREH 382
+ ED S + P P +H+V++ + H++R+L EYAR+H
Sbjct: 373 VDEDASKKHPFPCPTTYRTALMHYVDITSTVKTHVLRELAEYARDH 418
>SB_35265| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +2
Query: 20 ILFVIVNIFYSVVMAKFVIIEV*NTIIILYKLTI 121
I+ +I+ I ++V++ F+II V TIII+ + I
Sbjct: 204 IVIIIIVIIFNVIIIVFIIINVIITIIIIVNVII 237
>SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)
Length = 238
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +2
Query: 20 ILFVIVNIFYSVVMAKFVIIEV*NTIIILYKLTIPISYSRISTTAGPLVLIKALVLCDS 196
I+F I+ I + +II + N III+ + I I + I +V+I + C S
Sbjct: 154 IIFTIIIIITTTTTTIIIIIIIINIIIIIITIIIIIIATTIVIIVTTIVIISITITCVS 212
>SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 189 HNTRAFINTRGPAVVEIRL*LIGIVSLYNIMIVFYTSIITNFA 61
HN R INT V I L + + N M+ Y+ + NFA
Sbjct: 197 HNQRNLINTVSSQVTRISTQLADLKTSANTMLASYSFVTRNFA 239
>SB_53752| Best HMM Match : TSP_1 (HMM E-Value=8.5e-11)
Length = 635
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2
Query: 413 TRCCGSGTSTWWRGCRRTSRPDGGS 487
TR CG GTST R C GGS
Sbjct: 391 TRVCGKGTSTRKRSCTNPKPAWGGS 415
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,409,028
Number of Sequences: 59808
Number of extensions: 482437
Number of successful extensions: 2180
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2157
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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