Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19a03
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   4.9  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   4.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   6.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.6  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 628 NYVHHGMGLYLDAETVTAEEFKAAI 702
           N VH+G+G    ++   A  FKA I
Sbjct: 510 NIVHYGIGFITQSDIELANTFKAII 534


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 636 NVIVHVQPLISQEWYPDQR*PAFYSLF 556
           NV   V P   Q W    R P F+S++
Sbjct: 395 NVKYQVVPSALQMWSTSLRDPVFFSIY 421


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 636 NVIVHVQPLISQEWYPDQR*PAFYSLF 556
           NV   V P   Q W    R P F+S++
Sbjct: 395 NVKYQVVPSALQMWSTSLRDPVFFSIY 421


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 507 SEDISLREPPSGLDVLRHPLHHVEVPLPQHL 415
           S+DISL   P G+ +    L  +E+ + + L
Sbjct: 109 SDDISLFRGPEGIQINATELQKIELEIRRDL 139


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 636 NVIVHVQPLISQEWYPDQR*PAFYSLF 556
           NV   V P   Q W    R P F+S++
Sbjct: 21  NVKYQVVPSALQMWSTSLRDPVFFSIY 47


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 301 PNTLGDPTTHSHSRFSTSITQ 239
           P T   PTT   +  ST+I+Q
Sbjct: 380 PTTTASPTTEPSTTTSTTISQ 400


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 170 IKALVLCDSGAKNGLNLLSNTR 235
           +K +V C +G  +GL L  NT+
Sbjct: 205 LKNIVACGAGFIDGLGLGDNTK 226


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 79  YNHKFRHDYTIKNINYNKQYLIY 11
           YN+   ++Y   N NYN    +Y
Sbjct: 96  YNNNNYNNYNYNNNNYNNYKKLY 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,367
Number of Sequences: 438
Number of extensions: 4618
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)