Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19a02
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 29 0.63
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 27 3.4
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 27 3.4
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 26 4.5
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 26 4.5
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 4.5
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 26 4.5
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 26 4.5
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 5.9
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c... 25 7.8
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 29.1 bits (62), Expect = 0.63
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +3
Query: 270 SEALQGVELEFSGLDITFKENVPAQQFCAIELNDQTYKAFVYAVKNHYWYQMYIDDLPIW 449
S A GV F+G+ I F+ VP + +IE+ F+Y K+ Y+ ++ P
Sbjct: 495 SPAKDGVVTFFTGV-ILFQNLVPISLYISIEIVKTIQAIFIYFDKDMYYKKLKYACTPKS 553
Query: 450 GTVGEIDGDHFYIWTHK 500
+ + G YI++ K
Sbjct: 554 WNISDDLGQVEYIFSDK 570
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 579 DAKIPFTYEVNWKKSNINFEDRFDKYL 659
D + +Y V+WK S+ + R+DKY+
Sbjct: 231 DLTLVTSYSVSWKYSDTPWATRWDKYM 257
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 540 LQQSCFHYTQYQISCESRCKNGLHQSHLQCPILADRLYTFDTNN 409
LQ HY +SC L + LQ +LAD+ Y + +N
Sbjct: 12 LQVCSTHYAMTIVSCGFHSPQSLMNADLQHCLLADQNYLLNNSN 55
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 473 SINLTYSAPYWQIVYIHLIPIMVFDSINESFVSLIVEFDGT 351
S+ LTY PY + +Y + + F NE F + DG+
Sbjct: 261 SVYLTYDVPYGRSLYYYTSCALEFRFTNEFFPMDVTPNDGS 301
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -3
Query: 658 KYLSNLSSKFMLLFFQLTSYVNGIFASGLSRSLFSAVRLTSTILFP 521
+++ NLS K + L FQL++ N S + SL A+ + + +FP
Sbjct: 500 QFVHNLSQKLLFLVFQLSTNTNCYLDSKNATSLL-ALYINALKVFP 544
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +1
Query: 274 KLYKASNWSSAVLILRLRKMCRRSNFVPSNSTIKLTK 384
+L S+W+ + ++ L + C+RS + S+ ++ TK
Sbjct: 56 QLVGGSSWTGKIPVVLLNEHCQRSKWEKSDVKVRQTK 92
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 612 WKKSNINFEDRFDKYLDPNFFQHRIH 689
W+K N+N ED F P F R+H
Sbjct: 69 WQKENLNKEDSFVLLDGPPFANGRLH 94
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 615 KKSNINFEDRFDKYLDPNFFQHRI 686
KKS+ N + + K LDP FQH+I
Sbjct: 85 KKSSQNKQAKESKLLDPIAFQHKI 108
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 530 PVSIIPNIKFLVSPDVKMVSINLTYSAPYWQIVYIHLIPIMVF 402
P I I+FL +PD + L Y+ I+Y+ P VF
Sbjct: 539 PAGTIAIIEFLNAPDCRQAFSKLAYTRIKSSILYLEKAPRDVF 581
>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Frame = +3
Query: 15 FILIVN*TVVATLLRVKMKFLYILFIMWTIVHCDEHTHSYKDGEQVVLWMNTV------G 176
F+L +A L+ ++F Y W H THS V + N++ G
Sbjct: 167 FLLAYPNAYIAAALQTVVQFSYTTVFGWYTTHLFLSTHSLFPSFLVHAFCNSMGLPTLYG 226
Query: 177 PYHNRQETYAYFSL 218
NR +T Y++L
Sbjct: 227 KIGNRNQTRIYYTL 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,492
Number of Sequences: 5004
Number of extensions: 68171
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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