Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19a02
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024775-3|AAK68454.1| 580|Caenorhabditis elegans Hypothetical ... 270 8e-73
Z79759-8|CAE45097.1| 619|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr... 30 1.8
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass... 29 2.4
AF024501-2|AAB70367.2| 334|Caenorhabditis elegans Serpentine re... 29 3.1
U41009-10|AAA82284.2| 313|Caenorhabditis elegans Serpentine rec... 28 5.5
AF026213-6|AAB71307.1| 655|Caenorhabditis elegans Temporarily a... 28 5.5
Z81513-10|CAB04183.1| 247|Caenorhabditis elegans Hypothetical p... 28 7.2
AF304119-1|AAG50232.1| 326|Caenorhabditis elegans seven transme... 28 7.2
AF068718-6|AAC17769.2| 326|Caenorhabditis elegans Hypothetical ... 28 7.2
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 27 9.6
AF016685-16|AAG24152.2| 328|Caenorhabditis elegans Serpentine r... 27 9.6
>AC024775-3|AAK68454.1| 580|Caenorhabditis elegans Hypothetical
protein Y41D4A.4 protein.
Length = 580
Score = 270 bits (661), Expect = 8e-73
Identities = 118/207 (57%), Positives = 148/207 (71%), Gaps = 4/207 (1%)
Frame = +3
Query: 81 ILFIMWTIVHCDEHTHSYKDGEQVVLWMNTVGPYHNRQETYAYFSLPFCVGTKVTIGHYH 260
+L +V DEH H Y+ E+VVLWMNTVGPY NRQETY YFSLPFC G K IGHYH
Sbjct: 7 LLLFTSLLVEADEHDHLYEVDEEVVLWMNTVGPYSNRQETYTYFSLPFCKGEKKEIGHYH 66
Query: 261 ETLSEALQGVELEFSGLDITFKENVPAQQFCAIELNDQTYKAFVYAVKNHYWYQMYIDDL 440
ET+ E+L GVELEFSGLDI F+ N C +L + YK +YA++N Y+YQMY+DD+
Sbjct: 67 ETMGESLLGVELEFSGLDIKFRTNTKKTVVCEKKLTETDYKTLLYAIQNSYYYQMYLDDM 126
Query: 441 PIWGTVGEIDG----DHFYIWTHKKFDIGYNGNRIVEVNLTAENKERLSPDAKIPFTYEV 608
PIWG VGEID + ++THK+ DIGYN ++V+VNLT + + + P A++ FTYEV
Sbjct: 127 PIWGMVGEIDNTVNPPAYKLYTHKRLDIGYNDKQVVDVNLTTDGRVDIRPGAELTFTYEV 186
Query: 609 NWKKSNINFEDRFDKYLDPNFFQHRIH 689
W KS ++F RFDKYLDP+FFQHRIH
Sbjct: 187 QWSKSEVDFTKRFDKYLDPSFFQHRIH 213
>Z79759-8|CAE45097.1| 619|Caenorhabditis elegans Hypothetical
protein ZK858.6 protein.
Length = 619
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Frame = +3
Query: 201 YAYFSLPFCVGTKVTIGHYHETLSEALQGVELEFSGLDITFKENVPAQQFCAIELNDQTY 380
+ Y+S+PFC I + E L E ++G + + K+N C+ +L+ +
Sbjct: 54 FEYYSVPFCKPANGDIQYKSENLGEVMRGDRIVNTPYAFHMKKNEQCVSVCSNKLSKENV 113
Query: 381 KAFVYAVKNHYWYQMYIDDLPIWGTVGEI-DGDHFYIWTHKKFDIGYN 521
F ++ Y + +D+LP+ + GD +Y ++ IG N
Sbjct: 114 ALFKERIRQEYSAHLIVDNLPVATVINPAQSGDVYYDLGYRLGWIGDN 161
>Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical
protein C31E10.8 protein.
Length = 1272
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 264 TLSEALQGVELEFSGLDITFKENVPAQQFCAIELNDQTYKAFVYAVKNHYWYQMYIDD 437
TL LQG+ ++ G I+FKE A + A +LN A ++ Y ++ ++++
Sbjct: 301 TLQSLLQGIYVDSFGFRISFKEEPNALHYMATKLNHFYANRSKSASEHKYNWKRFLEE 358
>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
assigned gene nameprotein 177 protein.
Length = 1667
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -3
Query: 652 LSNLSSKFMLLFFQLTSYVNGIFASGLSRSLFSAVRLTSTILFPLYPISNF 500
+SNLSS+ + FF + S+ + FA G + S ++ + + FP + F
Sbjct: 569 VSNLSSEPLSFFFFVISWFSLFFACGFPFPIHSILKYFNPLFFPTTSVFRF 619
>AF024501-2|AAB70367.2| 334|Caenorhabditis elegans Serpentine
receptor, class i protein63 protein.
Length = 334
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -2
Query: 467 NLTYSAPYWQIVYIHLIPIMVFDSINESFVSLIVEFDGTKLLRRHIFL 324
++ +S P+W I Y H+I V I +SF ++ F +K+ FL
Sbjct: 3 DIDFSTPHWLITYYHVIG--VISLIFDSFSIYLILFKSSKIDNFRYFL 48
>U41009-10|AAA82284.2| 313|Caenorhabditis elegans Serpentine
receptor, class v protein17 protein.
Length = 313
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -2
Query: 560 VFCCKVDFNNPVSIIPNIKFLVSPDVKMVSINLTYSAPYWQIVYIHLIPIMVFDSINESF 381
VF V +N ++++ ++L + T W+I YI+ P+ +F+SI S
Sbjct: 90 VFWFLVVRSNGIALMTTQRYLTITQPTLPLTRFTQLLKPWKIAYIYWGPVAIFNSIFLS- 148
Query: 380 VSLIVEFD 357
SL + FD
Sbjct: 149 -SLEIGFD 155
>AF026213-6|AAB71307.1| 655|Caenorhabditis elegans Temporarily
assigned gene nameprotein 123 protein.
Length = 655
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 573 SPDAKIPFTYEVNWKKSNINFEDRFDKYL 659
S A+I ++Y + W K++I + R+D L
Sbjct: 255 SESAEITYSYSIKWTKTDIKWSSRWDYIL 283
>Z81513-10|CAB04183.1| 247|Caenorhabditis elegans Hypothetical
protein F26D2.13 protein.
Length = 247
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 199 VSCRLWYGPTVFIQSTT 149
VSCR WYG T+ I T+
Sbjct: 53 VSCRRWYGTTIVIAGTS 69
>AF304119-1|AAG50232.1| 326|Caenorhabditis elegans seven
transmembrane protein protein.
Length = 326
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 638 FKIYVALLPVNFICKWD-LCIRTKPFFVFCCKVDFNNPVS 522
F + + P++ +W LCI PF + + F+NP +
Sbjct: 282 FGVIAIIAPLDIPYRWSFLCIVPVPFIFYMATIPFSNPTT 321
>AF068718-6|AAC17769.2| 326|Caenorhabditis elegans Hypothetical
protein R01B10.5 protein.
Length = 326
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 638 FKIYVALLPVNFICKWD-LCIRTKPFFVFCCKVDFNNPVS 522
F + + P++ +W LCI PF + + F+NP +
Sbjct: 282 FGVIAIIAPLDIPYRWSFLCIVPVPFIFYMATIPFSNPTT 321
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +3
Query: 180 YHNRQETYAYFSLPFCVGTKVTIGHYHETLSE---ALQGVELEFSGLD 314
Y+N +E Y SL G + GH+ +L+ A Q LE+SG D
Sbjct: 803 YNNMKEDDNYLSLRAANGEFLLNGHFQVSLARQQIAFQDTVLEYSGSD 850
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +3
Query: 180 YHNRQETYAYFSLPFCVGTKVTIGHYHETLSE---ALQGVELEFSGLD 314
Y+N +E Y SL G + GH+ +L+ A Q LE+SG D
Sbjct: 803 YNNMKEDDNYLSLRAANGEFLLNGHFQVSLARQQIAFQDTVLEYSGSD 850
>AF016685-16|AAG24152.2| 328|Caenorhabditis elegans Serpentine
receptor, class x protein1 protein.
Length = 328
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 32 LNCCCYITACKNEIFIYIVYNVDYSSLR*THTFL 133
L C++ C F+YI++N + + H FL
Sbjct: 263 LTSMCHVFNCSANAFVYILFNQEIRKILAMHKFL 296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,489,845
Number of Sequences: 27780
Number of extensions: 374018
Number of successful extensions: 1166
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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