Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19a01
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_11213| Best HMM Match : RVT_1 (HMM E-Value=6.4e-38)                 29   2.7  
SB_10704| Best HMM Match : LMP (HMM E-Value=1.2)                       29   3.5  
SB_24697| Best HMM Match : Filament (HMM E-Value=0.11)                 28   6.1  
SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)                   28   6.1  
SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_50918| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_8536| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1401

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 492  KIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMAD 671
            K   +T+KLT   A++    + L+     ++  R+D++      E   RE   L +R+AD
Sbjct: 1147 KTRGMTEKLTQITAEVDLKKKELLEAEQSLVKVRKDSDGVMTSVEERTRELKSLESRLAD 1206


>SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 29/98 (29%), Positives = 49/98 (50%)
 Frame = -1

Query: 685 TSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNFCV 506
           TS A ++  +AS A +  A   S  ++SAS  + I S     S   +SAK++ A+ +  +
Sbjct: 31  TSSASASSNIASSASASSASMSSSSSLSASASSNIASSDIASSANASSAKTSSASASSNI 90

Query: 505 RSSILAITSFVSISTAGAYLPVHST*GMTSSKSHSCNS 392
            SS  A  S  S+S+A +     S+   +S  + S N+
Sbjct: 91  ASS--ASASSASMSSASSLSASASSNIASSDIASSANA 126



 Score = 31.9 bits (69), Expect = 0.50
 Identities = 23/78 (29%), Positives = 39/78 (50%)
 Frame = -1

Query: 685 TSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNFCV 506
           TS A ++  +AS A +  A   S  ++SAS  + I S     S   +SAK++ A+ +  +
Sbjct: 81  TSSASASSNIASSASASSASMSSASSLSASASSNIASSDIASSANASSAKTSSASASSNI 140

Query: 505 RSSILAITSFVSISTAGA 452
            SS  A +   S + A +
Sbjct: 141 ASSASASSDVASSAIASS 158


>SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +3

Query: 465 EMDTNDVIAKIDDLTQKL---TVANADLAEANRSLILFANEMIVARRDAETARQDCENAR 635
           + + +D+  K+DDL QKL        DL   +R + +   E+ + R   E  R + ++  
Sbjct: 93  DAEVSDLKIKLDDLQQKLKQEKQIQEDLQGHSRQVKMLTKELEILRAHEEKTRSELQSTE 152

Query: 636 RETAQLANRM 665
              ++L  ++
Sbjct: 153 GNASELEKKL 162


>SB_11213| Best HMM Match : RVT_1 (HMM E-Value=6.4e-38)
          Length = 510

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 534 DLAEANRSLI-LFANEMIVARRDAETARQDCENARRETAQLAN 659
           D+ E+ RS I LFA++ I  R     +R+DCE  RR+ ++LA+
Sbjct: 261 DIQESVRSEIRLFADDCICYR--TIRSREDCEELRRDISRLAS 301


>SB_10704| Best HMM Match : LMP (HMM E-Value=1.2)
          Length = 208

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = +3

Query: 471 DTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQ 650
           D + V   + D    ++    +LA     +   AN++   R D      D  + R +T+Q
Sbjct: 22  DISQVANNLADNRLDISQVGNNLANNRLDISQVANDLADNRPDTSQVANDLADNRPDTSQ 81

Query: 651 LANRMAD 671
           +AN +AD
Sbjct: 82  VANDLAD 88



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 471 DTNDVIAKIDD-LTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETA 647
           D + V   +D+    K  VAN DLA+    +   AN++   R D      +  + R E  
Sbjct: 120 DISQVANDLDNNRPHKSRVAN-DLADNRSDISQVANDLADNRPDISQVSNNLADNRLEEL 178

Query: 648 QLANRMADIAQD 683
           Q+AN + D   D
Sbjct: 179 QVANNLTDNRPD 190


>SB_24697| Best HMM Match : Filament (HMM E-Value=0.11)
          Length = 266

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +3

Query: 465 EMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRET 644
           E   ND+ A++  L QKL     +L  + +   L+ +E     + +   R D  + R++ 
Sbjct: 180 EQARNDLQAQVHSLQQKLNSLEDELDRSQKERALYESEANDLNQTSMKHRDDATSTRKQV 239

Query: 645 AQL 653
            +L
Sbjct: 240 MEL 242


>SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)
          Length = 599

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 21/75 (28%), Positives = 37/75 (49%)
 Frame = -1

Query: 676 AMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNFCVRSS 497
           A ++  +AS A +  A   S  ++SAS  + I S     S   +SAK++ A+ +  + SS
Sbjct: 340 ASASSAIASSASASSASMSSASSLSASASSNIASSDIASSANASSAKTSSASASSNIASS 399

Query: 496 ILAITSFVSISTAGA 452
             A +   S + A +
Sbjct: 400 ASASSDVASSAIASS 414


>SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 510 QKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARR 638
           +K+  A A L EA + L     + I  R+D ++  +DCEN  R
Sbjct: 5   EKVDPAEA-LLEAQQELATLQRQYICLRKDKKSYTEDCENVIR 46


>SB_50918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 534 DLAEANRSLI-LFANEMIVARRDAETARQDCENARRETAQLAN 659
           D+ E+ RS I LFA++ I  R     +R+DCE  +R+ ++LA+
Sbjct: 662 DIQESVRSEIRLFADDCICYR--TIRSREDCEELQRDISRLAS 702


>SB_8536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1029

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -1

Query: 646  AVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNFCVRS 500
            A +   F   CRA SA+ RAT+    NK   + A+  S +++VN   R+
Sbjct: 922  AAADEGFDLECRANSATVRATV--CLNKDMGKTAAQISVMSSVNLSSRA 968


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,087,489
Number of Sequences: 59808
Number of extensions: 531028
Number of successful extensions: 1345
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)