Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18p21
         (153 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    36   0.001
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   1.8  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    23   7.2  
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb...    23   7.2  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    23   7.2  

>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 35.5 bits (78), Expect = 0.001
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 21  VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDV 125
           V  ++A+RK W KFG  A    G +  TT+V E+V
Sbjct: 61  VQHAVAERKKWKKFGKEAGKNSGVDARTTSVGENV 95


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 6   IEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTN 110
           I + V+  S   R+ +  F D  +D+P   PA+T+
Sbjct: 75  INREVLCYSKDAREIYYNFEDEVADEPAEAPASTS 109


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 84  PGPNPATTNVAEDVFMXFITSK 149
           P P    TN+AED F  F  S+
Sbjct: 48  PKPPAINTNLAEDTFSGFPLSQ 69


>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 247

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 45 YVWQYSLKQHVFQ 7
          Y+ QY LKQH FQ
Sbjct: 60 YLVQYVLKQHSFQ 72


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 6   IEKRVVSKSIAKRKTWSKFGDSASDKPGP 92
           IEK  V K  AKRK + + G     K  P
Sbjct: 183 IEKSSVDKENAKRKRYVEEGTKQGQKKKP 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 537,038
Number of Sequences: 5004
Number of extensions: 6440
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 31
effective length of database: 2,207,354
effective search space used: 41939726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)