Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18p21
         (153 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1015 + 33512023-33512359,33513550-33514082                       29   0.51 
02_05_1014 + 33510108-33510471,33510857-33511362                       28   1.2  
07_01_0694 - 5248381-5249118                                           26   4.8  
01_05_0203 - 19241442-19241710,19241845-19242055,19242602-192431...    26   4.8  
04_03_0008 + 9296711-9298096                                           25   6.3  
01_05_0043 + 17517940-17518563                                         25   6.3  
12_01_0994 - 10077322-10077696,10078303-10078839,10079062-10079112     25   8.3  
07_03_1409 + 26359581-26360561                                         25   8.3  

>02_05_1015 + 33512023-33512359,33513550-33514082
          Length = 289

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 6   IEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDV 125
           I +  +SKS  +R++W KFGD+  +  G      +  E V
Sbjct: 66  IARARLSKSAIERRSWPKFGDAVQEDVGARLTMVSTEEIV 105


>02_05_1014 + 33510108-33510471,33510857-33511362
          Length = 289

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 21  VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFM 131
           V+K  A+R+ W+KFGD+A +       T    E++ +
Sbjct: 79  VTKRAAERRGWAKFGDAAHNDDAGARLTVVSPEEIVL 115


>07_01_0694 - 5248381-5249118
          Length = 245

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 6   IEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVF 128
           I K + S S A   + +   D  ++ P P PA + V  D F
Sbjct: 51  IRKELASDSPAAPPSTTTSSDEPAESPPPPPAASGVDPDAF 91


>01_05_0203 -
           19241442-19241710,19241845-19242055,19242602-19243181,
           19243204-19244189
          Length = 681

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 12  KRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMXFIT 143
           K+   K+  K  + +   D+A D P P P T  +AE      IT
Sbjct: 91  KKHKRKASIKTPSAAARSDAAGDAPSPPPETRTIAERSLEGLIT 134


>04_03_0008 + 9296711-9298096
          Length = 461

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 63  GDSASDKPGPNPATTN 110
           G S  D+P PNPA TN
Sbjct: 277 GKSTRDRPYPNPAGTN 292


>01_05_0043 + 17517940-17518563
          Length = 207

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 48  TWSKFGDSASDKPGPNPATTN 110
           TW   G S  D P PNPA TN
Sbjct: 122 TWG--GKSTRDPPYPNPAGTN 140


>12_01_0994 - 10077322-10077696,10078303-10078839,10079062-10079112
          Length = 320

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 12  KRVVSKSIAKRKTWSKF-GDSASDKPGPNPATTNVAE 119
           KR  S ++ +   WS   G+ ASD P P      VA+
Sbjct: 40  KRASSLALEQSNGWSLHCGERASDSPSPRALPLRVAD 76


>07_03_1409 + 26359581-26360561
          Length = 326

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 18  VVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDV 125
           V S +  +++   + GD A+  P   PATTN+ + +
Sbjct: 162 VKSPTSGRQRRRRRGGDFAATAPAAAPATTNMVQPI 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,466,436
Number of Sequences: 37544
Number of extensions: 41735
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 14,793,348
effective HSP length: 31
effective length of database: 13,629,484
effective search space used: 258960196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)