Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18p21
         (153 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50044-2|CAA90354.1|  256|Caenorhabditis elegans Hypothetical pr...    44   2e-05
Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical pr...    29   0.59 
AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical...    25   7.3  
AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.      25   7.3  

>Z50044-2|CAA90354.1|  256|Caenorhabditis elegans Hypothetical
           protein F22B5.2 protein.
          Length = 256

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 23/48 (47%), Positives = 28/48 (58%)
 Frame = +3

Query: 6   IEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMXFITSK 149
           I KRV  K +A RK W KFG    +  GP  ATT VAE+V M F  ++
Sbjct: 52  INKRV-PKVVADRKKWVKFGSCKGEPAGPQVATTYVAEEVDMQFTRNR 98


>Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical
           protein M03B6.4 protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +3

Query: 39  KRKTWSKFGDSASDKP----GPNPATTNVAE 119
           KRKT  KFGD A D P      NP TT+  E
Sbjct: 21  KRKTTRKFGDDAYDSPKYFMEGNPTTTSTFE 51


>AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical
           protein Y75B8A.22 protein.
          Length = 1353

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 6   IEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVF 128
           IE  VV K   KRK++S+FG S + K G    + N ++ VF
Sbjct: 254 IENHVV-KETQKRKSFSRFGGSYTIK-GLKGISANSSQVVF 292


>AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.
          Length = 1353

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 6   IEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVF 128
           IE  VV K   KRK++S+FG S + K G    + N ++ VF
Sbjct: 254 IENHVV-KETQKRKSFSRFGGSYTIK-GLKGISANSSQVVF 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,859
Number of Sequences: 27780
Number of extensions: 35966
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 12,740,198
effective HSP length: 31
effective length of database: 11,879,018
effective search space used: 225701342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)