Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18p21
         (153 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   1.4  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   1.4  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    20   2.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    19   4.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    19   4.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    18   9.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                18   9.9  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
          protein.
          Length = 81

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 87 QACRWLNLQICSKFYVWQYSLKQHV 13
          QA +  + + C K YV   +LK H+
Sbjct: 12 QAKKSFSCKYCEKVYVSLGALKMHI 36


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 97  GLGPGLSLAESPNLLQVL 44
           G+ PG S A +PN ++ +
Sbjct: 68  GVAPGTSSATNPNAMKTI 85


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
          finger domain-Z2 isoform protein.
          Length = 71

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 63 QICSKFYVWQYSLKQHV 13
          Q+C K    + SLK+HV
Sbjct: 9  QLCGKVLCSKASLKRHV 25



 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -1

Query: 60 ICSKFYVWQYSLKQHVFQF 4
          IC + Y  + SL  H++ +
Sbjct: 40 ICERVYCSRNSLMTHIYTY 58


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 64  PNLLQVLRLAILFETTRFS 8
           P LL + R    FET R+S
Sbjct: 354 PRLLVMRRPQYKFETNRYS 372


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 64  PNLLQVLRLAILFETTRFS 8
           P LL + R    FET R+S
Sbjct: 354 PRLLVMRRPQYKFETNRYS 372


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
          acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 55 LQVLRLAILFET 20
          +Q+L L +LF T
Sbjct: 4  MQILTLGVLFNT 15


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 54  SKFGDSASDKPGPNPAT 104
           S  G SA   PG  P+T
Sbjct: 292 SALGRSACHSPGVYPST 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,754
Number of Sequences: 438
Number of extensions: 448
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2664060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)