Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18p14
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    29   0.92 
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.1  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.7  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    26   6.5  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    26   6.5  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    26   6.5  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   6.5  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   8.6  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    25   8.6  

>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 293 ASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVT 436
           A  F +  + IE  IK L +IN + +   + +L  YNE +E + N  T
Sbjct: 154 ARKFNTSPQRIEALIK-LRRINDEFEEKKKPILHSYNEVMEKMLNACT 200


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 359 PDLKSSPRAMLQHYNECLENLDNPVTDEHH 448
           P+L++  R  L+H  EC+E   + V+ E H
Sbjct: 771 PELQNEARRGLEHIRECIEKRRDIVSREDH 800


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/53 (22%), Positives = 31/53 (58%)
 Frame = +2

Query: 311 YKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVTDEHHLLTFGKE 469
           Y E+++   K+LNK +   K + +A ++  +  + +L++ + ++  LL+  +E
Sbjct: 186 YSELLDNYKKQLNKASESCKGNYQACIESRSTLITSLESLIEEQKKLLSEEEE 238


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 152 FNEPTQKNYEYIKKLFLRTKYMDDS-IDYKDFNRRILLI 265
           F EP  K Y  +K+LF  TKY+ D  I ++D     LLI
Sbjct: 138 FTEPQIKCY--MKQLFAGTKYLHDQLILHRDLKAANLLI 174


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 317 EIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVTDEHH 448
           E    A+ RL    P  + S  +     N  LEN+DN V D+ H
Sbjct: 471 EYFHGALSRLFDYAPQFERSIVSSSNLQNLTLENVDNTVWDKRH 514


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +2

Query: 26  NFVDVDTFARQLITDKCSALIKNADLLPANILEIVEKARDRYFNEPT--QKNYEYIKKLF 199
           +  D + F R++  D   A+  N +    N L+++EKA     N P   Q + +  K +F
Sbjct: 59  SLADPNHFIRKVENDNMDAISANINSKLENRLKVLEKAISSITNSPIAGQISLKSEKDVF 118

Query: 200 LRTKYMDDSID 232
           L+     D I+
Sbjct: 119 LQGLLSMDEIE 129


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +2

Query: 56  QLITDKCSALIKNADLLPANILEIVEKARDRYFNEPTQKNYEYIKKLFLRTKYM 217
           QL+  KC +     D+L    +E ++KA+D    E  Q   E    LF +  ++
Sbjct: 803 QLLRKKCGSFCSADDVLIFKAVESLKKAKDTVDIEERQSLIELSYTLFKKAAHV 856


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 462 EKKLLQKYSSKRLNTVTPTLMPSAW 536
           EKK+LQ   S  L +  P  + SAW
Sbjct: 82  EKKVLQDLDSPALKSYNPKAVESAW 106


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 132 KRPETGILMSQLKKTMNTLKNY 197
           K+P+ G+ +S L+KT+N  +N+
Sbjct: 137 KKPKDGLDLSALQKTLNGSRNF 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,870,962
Number of Sequences: 5004
Number of extensions: 57710
Number of successful extensions: 216
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)