Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18p14
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41012-4|AAA82296.2|  413|Caenorhabditis elegans Hypothetical pr...    31   0.65 
Z96100-1|CAB09530.2|  964|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine r...    28   6.1  
AC025724-2|AAG23378.2|  167|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z70687-3|CAM35839.1|  332|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>U41012-4|AAA82296.2|  413|Caenorhabditis elegans Hypothetical
           protein C06A6.5 protein.
          Length = 413

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 20  SNNFVDVDTFARQLITDKCSALIKNADLLPANILEIVEKARD--RYFNEPTQKNYEYI 187
           + NF D D F +Q +TDKC  L++       N+ E+ E+      YF +P  K  + +
Sbjct: 216 TGNFNDYD-FVKQWVTDKCIPLVREVTF--ENVEELTEEGMPFLIYFRDPDNKTTDKV 270


>Z96100-1|CAB09530.2|  964|Caenorhabditis elegans Hypothetical
           protein H15N14.1c protein.
          Length = 964

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 143 DRYFNEPTQKNYEYIKKLFLRTKYMDDSIDYKDFNRRILL-IVFKFALNKSASYFPSYKE 319
           D   N+PT K    +KK  L+   ++ ++   D  ++I+     K++    AS  P   E
Sbjct: 281 DAISNQPTPKKVSAVKKAKLQLTPVESALSLLDLMQKIIAESAEKYSPVFEASEVPKDPE 340

Query: 320 IIEVAIKR 343
           I EV +K+
Sbjct: 341 IPEVEVKK 348


>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +2

Query: 314 KEIIEVAIKRLNKINPDLK---SSPRAMLQHYNECLENLDNPVTDEHHLLTFGKEVATKI 484
           + I   A+   N  N +L     +   M + ++EC EN  NPV  +  +  +  E  +  
Sbjct: 652 RTITHQAVSNWNAKNVNLNFRFGAHNVMAEKFHECPENFKNPVNIQ-FVAPWNIEPVSAN 710

Query: 485 FIEAFEYSYTNTNAISMDKTDEFDF 559
            +E+ E     T+ I +   D+ D+
Sbjct: 711 LLESVEIKLQYTDDILLTIEDQLDY 735


>U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine
           receptor protein 10 protein.
          Length = 510

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -3

Query: 193 FFNVFIVFLSWLIKIPVSGLFYNL*NV---CRQQIRIFD 86
           F+ VF++++ WL+ +   G+FY         R++I  FD
Sbjct: 282 FYKVFLIWIPWLLLMKRPGVFYKKRRATVQAREEISFFD 320


>AC025724-2|AAG23378.2|  167|Caenorhabditis elegans Hypothetical
           protein Y67D8C.4 protein.
          Length = 167

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +2

Query: 311 YKEIIEVAIKRLNKINPDLKSSPRAM--LQHYNECLENLDNPVTDEHHLLT 457
           +KE+    ++ L+ I+    S+P+A+  L   + C E++DNP+  + H ++
Sbjct: 49  HKELGRCPLEVLHSIHNFEPSTPQAVFELDESSNCQESIDNPMKRQKHFVS 99


>Z70687-3|CAM35839.1|  332|Caenorhabditis elegans Hypothetical
           protein T14C1.3 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 8/41 (19%), Positives = 22/41 (53%)
 Frame = -3

Query: 601 RSCIWQRFQCRLFNKIKFICLVHADGISVGVTVFKRFDEYF 479
           + CI+    C  FN+++ +C++  + +  G  ++ + +  F
Sbjct: 29  QKCIFSNLNCTDFNRLRRVCVLFKEYVDAGEPMYDKIEIEF 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,742,121
Number of Sequences: 27780
Number of extensions: 322351
Number of successful extensions: 873
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)