Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18p13
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.69 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   3.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.9  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   6.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.5  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
 Frame = +2

Query: 428 YCVRYNNTSDALYQN-PELAYNLINGLRIICSKLPDP------PPHQQAPW 559
           Y   YNN ++  Y N  +L YN+IN +  I   +P P      PP    PW
Sbjct: 334 YNNNYNNYNNNNYNNYKKLYYNIIN-IEQIPVPVPVPIYCGNFPPRPMGPW 383


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 359 PCCRSNFYWDL 327
           PC    FYWDL
Sbjct: 83  PCSSFRFYWDL 93


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 359 PCCRSNFYWDL 327
           PC    FYWDL
Sbjct: 83  PCSSFRFYWDL 93


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 359 PCCRSNFYWDL 327
           PC    FYWDL
Sbjct: 83  PCSSFRFYWDL 93


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 248 IQELENFEQWFKNNLSYSFSQKAEKVVNPNRNWNDN 355
           I  L N      NN  Y+++       N N N+N+N
Sbjct: 315 ISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNN 350


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -1

Query: 628 HNGNVHKHLGHCDCEMVPIGD 566
           H G    H  HCD + V + +
Sbjct: 32  HTGEKPYHCSHCDRQFVQVAN 52


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 388  RSGLWYRVPHAHRVLRTLQQHQRRVIPEPRIGLQSH*RAAHHLQQIARSAAAPTSALGPG 567
            R+G +Y VPH+    +  ++H  R  P  R   QS  +     +    +AAA  + + PG
Sbjct: 1064 RAGSYYGVPHSTLEYKVKERHLMR--PRKRDQKQSDDKTK---ETSTVTAAAAATNIRPG 1118


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 284 NNLSYSFSQKAEKVVNPNRNWND 352
           N    + S + +K++N + N+ND
Sbjct: 378 NEYMLALSNRMQKIINNDFNFND 400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,478
Number of Sequences: 438
Number of extensions: 3800
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)