Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18p10
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...    26   6.1  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    26   6.1  
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    25   8.0  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   8.0  
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    25   8.0  

>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/53 (30%), Positives = 18/53 (33%)
 Frame = +3

Query: 183 RAYCAHCSRTAGCAHCSRAAGCAHCSRTAGCAHCLRAAGWAHCSRAAGCARSS 341
           R  C  C R        R A    C    GC   L    W   + AA  ARS+
Sbjct: 36  RYQCPFCGRNT----VKRTAAGIWCCNGKGCKKVLAGGAWTVTTAAATSARST 84


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 69  QRQRPAYKSRQDPPRTNATHKKS 1
           Q Q+P Y     PPR +  HKKS
Sbjct: 39  QHQQPTYWYPPPPPRHHKEHKKS 61


>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 551 RCMRALTYF*RAYCTCCSHAADCTVLYDW 637
           RC +   +  ++ C CC + A  T  Y+W
Sbjct: 21  RCGKRSFHIQKSTCACCGYPAAKTRSYNW 49


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 230 AVRAASGTRAVRAVCAPEVDERAQAAAREQHVQSARL 120
           +V      RAV   C P+  E A A  R + + +A L
Sbjct: 11  SVNLGDSNRAVSPFCLPDCSENAVAQTRSKTLDNAAL 47


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 551 RCMRALTYF*RAYCTCCSHAADCTVLYDW 637
           RC +   +  ++ C CC + A  T  Y+W
Sbjct: 21  RCGKRSFHIQKSTCACCGYPAAKTRSYNW 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,869,437
Number of Sequences: 5004
Number of extensions: 26764
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)