Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18p10
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.7  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   8.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.7  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = +2

Query: 467 LAARIARVPLPARARLLQTCILHVLLACRCMRALTYF*RAYCTCCSHAADCTVLY 631
           + A++ R  +  +A      I+   + C       Y  RA+C  C H    +VL+
Sbjct: 442 IKAQVKRFRMETKAAKTLGIIVGGFILCWLPFFTMYLVRAFCRNCIHPTVFSVLF 496


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 336 SSTSGAHTARTARVPL 383
           S+T GA+T R  ++P+
Sbjct: 787 SATEGAYTTRGGKIPV 802



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 422 SSTSGAHTARTARVPL 469
           S+T GA+T R  ++P+
Sbjct: 787 SATEGAYTTRGGKIPV 802


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -1

Query: 687 VRSSRPQIKRHRLXRHCQSYSTVQSAACEQ 598
           V  S+  +KRH   +H +     +   CE+
Sbjct: 14  VLCSKASLKRHVADKHAERQEEYRCVICER 43


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 681 SSRPQIKRHRLXRHCQSYSTVQSAACEQ 598
           S++  +KRH+  +H Q  ++   A C +
Sbjct: 382 STKLTLKRHKEQQHFQPLNSAVCALCHK 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,928
Number of Sequences: 438
Number of extensions: 2217
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)