Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18p07
         (282 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical ...    28   0.90 
Z69793-8|CAA93674.2|  354|Caenorhabditis elegans Hypothetical pr...    25   6.3  
U53154-7|AAC25857.1|  356|Caenorhabditis elegans Nuclear hormone...    25   6.3  
AL008867-3|CAC14271.1|  354|Caenorhabditis elegans Hypothetical ...    25   6.3  
AF273783-1|AAG15132.1|  358|Caenorhabditis elegans nuclear recep...    25   6.3  

>AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical
           protein F52F10.3 protein.
          Length = 684

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 104 KKSLFIYYLLTYKIWYTSVQIVSVQRH 184
           +K++FI  +LT+ +W  +  I+SV+ H
Sbjct: 207 EKNIFIKIILTFSLWTNAELILSVKEH 233


>Z69793-8|CAA93674.2|  354|Caenorhabditis elegans Hypothetical
           protein R03A10.6 protein.
          Length = 354

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 187 TMALNRNDLNTSVPNFVC**IIYK*TFFVLLIH 89
           T++  +NDL T +P+F C  I Y   F   + H
Sbjct: 90  TLSGYKNDLQTGLPSFWCDMIPYMAAFLPSIFH 122


>U53154-7|AAC25857.1|  356|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 42 protein.
          Length = 356

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 103 VLLIHFSV*FIVFEIGGLVSINS 35
           +L +HF V FI+FE GG  S NS
Sbjct: 178 LLCVHFMVPFILFE-GGYKSTNS 199


>AL008867-3|CAC14271.1|  354|Caenorhabditis elegans Hypothetical
           protein R03A10.6 protein.
          Length = 354

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 187 TMALNRNDLNTSVPNFVC**IIYK*TFFVLLIH 89
           T++  +NDL T +P+F C  I Y   F   + H
Sbjct: 90  TLSGYKNDLQTGLPSFWCDMIPYMAAFLPSIFH 122


>AF273783-1|AAG15132.1|  358|Caenorhabditis elegans nuclear receptor
           NHR-42 protein.
          Length = 358

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 103 VLLIHFSV*FIVFEIGGLVSINS 35
           +L +HF V FI+FE GG  S NS
Sbjct: 180 LLCVHFMVPFILFE-GGYKSTNS 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,832,694
Number of Sequences: 27780
Number of extensions: 71790
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)