Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18o23
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   181   7e-47
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   7.4  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   9.7  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  181 bits (441), Expect = 7e-47
 Identities = 95/190 (50%), Positives = 121/190 (63%), Gaps = 1/190 (0%)
 Frame = +1

Query: 4   FGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATI 183
           FG++SHII      K  F                 +V +HH+FTVG+D+DTRAYF++AT+
Sbjct: 258 FGVVSHIIPS-LAHKPIFGKEGMLWAMLSIALLGLMVWSHHLFTVGLDVDTRAYFSAATM 316

Query: 184 IIAVPTGIKIFR*LATIHGTQINYNP-NIL*RLGFVFLFTVGGLTGVILANSSIDITLHD 360
           +IA+PTGIKIF  LAT+ G  I ++   +L  +GF+ LFT+GGLTGVIL+NS +DI  HD
Sbjct: 317 VIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSNSVLDIAFHD 376

Query: 361 TYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQH 540
           TY+VVAHFHYVLS               P   GL  N  +  IQF+ +FIGVNI F PQH
Sbjct: 377 TYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGLMYNETLASIQFWILFIGVNIVFGPQH 435

Query: 541 FLGLAGIPRR 570
           FLGL G+PRR
Sbjct: 436 FLGLNGMPRR 445


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 453 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRL 581
           +RPF KFL  K  IF + YW +  +  T +      T  I+ L
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGLLNGTGWIYSL 242


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +1

Query: 310 LTGVILANSSIDITLHDTYYVV 375
           L  ++LAN+++D T+H  Y+++
Sbjct: 657 LDHILLANATLDKTVHSAYWLM 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,013
Number of Sequences: 5004
Number of extensions: 29941
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)