Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18o10
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   1.7  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   3.8  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.1  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.1  
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    25   6.7  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   8.8  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    25   8.8  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 238 MCQSCKPANKIQCFECKC-RYLASSLSTLDEGLQNGWDIF 354
           +C+S    +K QC+ C+C R  +   ++L     + W IF
Sbjct: 407 ICRSRSCPSKYQCYSCRCARNSSLEFTSLPGQSSDTWSIF 446


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 208 PTPAPDVDEIMCQSCKPANKI 270
           P P P VD   C+SC P+ ++
Sbjct: 582 PVPRPRVDLTQCKSCGPSYRL 602


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 233 SSTSGAGVGL*YVCKYCIMVLNWGTCLMNSS 141
           S+TSGA   L  V K  +M L  G CL+ +S
Sbjct: 537 SATSGAAGDLFSVSKNLMMTLTAGLCLITAS 567


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 87  QQHRQHTQCKKHFFDIFARRV 149
           Q H+ H   K HFF IF +++
Sbjct: 339 QHHQCHPLIKTHFFGIFGQKI 359


>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 7   VDGKGLTFFTEFNKCIVSIKSSFENQANNTD 99
           VD    T   E  K  +  ++ F NQANN D
Sbjct: 159 VDEAFFTLAREIKKQKIDAENEFSNQANNVD 189


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 256 PANKIQCFECKCRYLASSLS 315
           P   I CFE  C Y+  +LS
Sbjct: 520 PRRLISCFEAPCSYIIGTLS 539


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 267 FVCGLARLTHDLVHVGCRRRIVICLQVLHNGPKLGHLFDE 148
           F  G  R T D+V       ++ C  ++H    +G+L+DE
Sbjct: 146 FSSGSGRNTTDIVLFPFVLAVIKCCDIVHREFLMGNLYDE 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,673
Number of Sequences: 5004
Number of extensions: 54528
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)