Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18o10
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL132952-14|CAB63386.1|  257|Caenorhabditis elegans Hypothetical...    28   4.7  
U37429-12|AAA79353.1|  274|Caenorhabditis elegans Alkylguanine d...    27   8.2  
AL024499-5|CAC42318.1|  562|Caenorhabditis elegans Hypothetical ...    27   8.2  
AF031840-1|AAC13676.1|  562|Caenorhabditis elegans GLY6c protein.      27   8.2  
AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical ...    27   8.2  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical
           protein F49A5.4 protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 327 LVEGAQRGRQVSAFALETLNFVCGLARLTHD 235
           +  G Q G+  SA   ET++FVC L    +D
Sbjct: 157 MTNGTQAGKWASASCTETMSFVCELPATIYD 187


>AL132952-14|CAB63386.1|  257|Caenorhabditis elegans Hypothetical
           protein Y51H4A.23 protein.
          Length = 257

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 478 NLICDKAYSLYTKRDMCVPFVKECKKATIGLRQEDHERVLSILNAQ 615
           NL  DK + +     MC PF+K   ++ I +R    E+ LS +  Q
Sbjct: 69  NLNSDKKWYITYFEFMCNPFIKYMDESLISIRDVATEKFLSTMRDQ 114


>U37429-12|AAA79353.1|  274|Caenorhabditis elegans Alkylguanine dna
           alkyltransferaseprotein 2 protein.
          Length = 274

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 109 NVKNIFSIFLRDEFIKQVPQFRTIMQYLQTYYNPTPAPDVDEIMCQSCK 255
           NVK IF+  L+ + +  V     + Q  +++Y+      +DE++ Q  K
Sbjct: 50  NVKEIFNCILQTQPLPVVQPCHPVRQPRESFYSSHEHDPMDEVLLQEVK 98


>AL024499-5|CAC42318.1|  562|Caenorhabditis elegans Hypothetical
           protein H38K22.5c protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 373 CQTWVLKKCPNHFASPRRGCSARTPSICICT 281
           C  W L+ CP    +   G   R P I  C+
Sbjct: 487 CLAWTLRSCPTQTTAQPSGQVTRVPKITDCS 517


>AF031840-1|AAC13676.1|  562|Caenorhabditis elegans GLY6c protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 373 CQTWVLKKCPNHFASPRRGCSARTPSICICT 281
           C  W L+ CP    +   G   R P I  C+
Sbjct: 487 CLAWTLRSCPTQTTAQPSGQVTRVPKITDCS 517


>AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical
           protein W09B6.1b protein.
          Length = 813

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 143 TSSSNKCPNLGPLCNTCKHITIRRRHPT 226
           T  +++   +  +C+T KH+TIR   PT
Sbjct: 496 TRGTSRTEAMNTMCSTLKHMTIRSSFPT 523


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
           protein W09B6.1a protein.
          Length = 2054

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 143 TSSSNKCPNLGPLCNTCKHITIRRRHPT 226
           T  +++   +  +C+T KH+TIR   PT
Sbjct: 496 TRGTSRTEAMNTMCSTLKHMTIRSSFPT 523


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,964,532
Number of Sequences: 27780
Number of extensions: 324572
Number of successful extensions: 1121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)