Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18o08
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2 |Sch...    27   2.7  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   4.8  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   6.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.3  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   8.4  

>SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 519 VQQRRGRIEMALDGSGIKLYCRLGVLEQAQRRLS 418
           +Q   G I+  LD   +   CR+G+L + QRRLS
Sbjct: 1   MQTYTGIIKTPLDAIILFEACRIGLLPRVQRRLS 34


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 370 ELQNWFYEHVLPQCTARQSALSLLQDA 450
           E+QNW++EH    C     A +  Q+A
Sbjct: 190 EIQNWYFEHHTELCLLIHHAEARAQEA 216


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = -2

Query: 225 AFVLAVDVISNCXXXXXXXXXVCNVPGHKSDRLLAAEHVPQRERVFTEFELANFNLSHF 49
           +++L V  I  C          C + G+K+ R+L    V   + ++T    ++ N  HF
Sbjct: 73  SYLLKVKNIGKCNSITVILYQFCKIRGYKAVRVLFPVGVQYIKELYTLLNESSNNTWHF 131


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = -2

Query: 414 GALGQHVFVKPILQLRRVGHLGAHEQLYNAYFVE*YCLRLQIQRIALFNVFFFADINTRL 235
           GAL +   +  + +L  + HL   E ++N   V      L +  I+L  V  +  + T  
Sbjct: 484 GALSEVYGLTHLTELEILEHLNKKEHVFNILTVFKDLQSLNVLDISLKGVNAWNSLETSY 543

Query: 234 LECAFVLAVDVIS 196
             C  VL  +VI+
Sbjct: 544 YNCMTVLEDEVIA 556


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 395  CS*NQFCSSAALVILERMNNCITPILSSNIVCVCKYSGLPCLT-CFSLLI 249
            C  N FC     +++  +  C  PI+ +N+V      GL  LT CF+  I
Sbjct: 952  CLSNNFCMEHLPLLITILEKCDNPIIRNNLVI-----GLADLTVCFNHFI 996


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,039
Number of Sequences: 5004
Number of extensions: 45184
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)