Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18o08
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54230| Best HMM Match : EGF (HMM E-Value=0) 30 1.6
SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09) 29 3.8
SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 29 3.8
SB_29944| Best HMM Match : PPI_Ypi1 (HMM E-Value=1.6) 29 3.8
SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 28 5.0
SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2) 28 6.6
SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_45814| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_32492| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
Length = 1359
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 332 YSCSCAPR*PTRRSCKIGFTNTCCPSAPPDSRR*ACS 442
Y CSC P T + C+ G N C PS+ P CS
Sbjct: 899 YRCSCCPPCFTGQHCEKGI-NKCIPSSNPCKNGATCS 934
>SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)
Length = 162
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -2
Query: 153 VPGHKSDRLLAAEHVPQRERVFTEFELANFNLSH 52
V GH +DRL +A HV ++E+ E+ L + L+H
Sbjct: 12 VMGHSADRLASAFHVSRQEQ--DEYALRSHTLAH 43
>SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 450 GVLEQAQRRLSGGALGQHVFVKPILQLRRVGHLGAHEQLYNAYFVE 313
GVL + R L V + + RR+ +L AHE +Y Y +
Sbjct: 207 GVLHKIPRVLGNTLASCQVLCRSCKEPRRLDNLAAHEAIYTTYIAQ 252
>SB_29944| Best HMM Match : PPI_Ypi1 (HMM E-Value=1.6)
Length = 351
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 176 KTPKKQLEITSTASTNAHSSKRVLISAKKNTLNK---AIRCICRRKQYYSTK*AL 331
++P KQLEI + S + + I+ K NK IR C+R +Y+ + A+
Sbjct: 126 RSPTKQLEILNNYSIHVQTRTCSCINIDKGKKNKQPNVIRAPCQRNRYFPEETAI 180
>SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
Length = 1124
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 170 NLKTPKKQLEITSTASTNAHSSKRVLISAKKNTLNK 277
N + PKK+L+ + N+H K + AKK+ K
Sbjct: 271 NERRPKKKLKYKKRSKINSHKKKLINAKAKKDATKK 306
>SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2)
Length = 760
Score = 27.9 bits (59), Expect = 6.6
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Frame = -3
Query: 476 AELNFTVAWASWSRLNADCRAVHWGNTCS*NQFCSSAALVILERMNNCITPIL-SSNIVC 300
AE+N + A+ ++ + +C N+ N CS A I RM T IL S +VC
Sbjct: 284 AEVNMR-SQANSAKADFECELFQRYNSTKTNSNCS--AKDIPSRMICLNTFILVPSRVVC 340
Query: 299 VCKYSGLP----CLTCFSLLILIHACSNVHLYLPS 207
+ + +P CL F L++ C N + +PS
Sbjct: 341 LNTFIHVPSRVVCLNTFILVLSRMVCLNTFILVPS 375
>SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -2
Query: 558 VCSLADLEQIPFGVQQRRGRIEMALDGSGIKLYC 457
VCS ++ + + ++ GRI++ ++ +GI L+C
Sbjct: 96 VCSDESVKAVVAEIVEKEGRIDVLVNNAGIGLFC 129
>SB_45814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 102
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 452 WASWSRLNADCRAVHWGNTCS*NQFCSSAALVILERMNN 336
W + RLN+ CR W C N +C R+N+
Sbjct: 31 WYCYRRLNSYCRLNCWYCYCRLNSYCRLNCWYCYRRLNS 69
>SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = -2
Query: 576 NQSPRQ----VCSLADLEQIPFGVQQRRGRIEMALDGSGIKLYC 457
N PRQ +C + E + FG +Q IE LD + YC
Sbjct: 550 NMEPRQLNEFICEITMGELVIFGEEQLDSLIESTLDWESFEQYC 593
>SB_32492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 124 EQPVRFVARDIANKLKFKNTKKAIRDHVDGKYKCTFEQACINISKEKHVKQGNPLY 291
+QPV V+R +KFK+++ ++ + Y TFE+ NI KH+ + LY
Sbjct: 20 DQPVALVSRSKNLHIKFKSSQNSMAEGFKIFY-VTFEERFRNI--VKHIVEDGELY 72
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,141,764
Number of Sequences: 59808
Number of extensions: 388530
Number of successful extensions: 1216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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