Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18o08
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 32 0.27
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 32 0.27
AC087079-12|AAK27874.2| 472|Caenorhabditis elegans Hypothetical... 29 1.9
U29377-9|AAA68718.3| 405|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 29 3.3
U64844-10|AAB18310.1| 448|Caenorhabditis elegans Hypothetical p... 29 3.3
AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical ... 29 3.3
Z46787-5|CAA86743.1| 409|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z22181-9|CAA80186.1| 453|Caenorhabditis elegans Hypothetical pr... 28 4.4
AF039713-7|AAB96722.1| 203|Caenorhabditis elegans Hypothetical ... 28 4.4
U10402-10|AAA19064.1| 355|Caenorhabditis elegans Gro-1 operon g... 28 5.8
AY052770-1|AAL14109.1| 355|Caenorhabditis elegans GOP-2 protein. 28 5.8
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ... 28 5.8
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z68317-3|CAA92687.1| 599|Caenorhabditis elegans Hypothetical pr... 27 7.7
U64844-12|AAB18312.4| 417|Caenorhabditis elegans Hypothetical p... 27 7.7
U41533-7|AAA83170.1| 337|Caenorhabditis elegans Small glutamine... 27 7.7
AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical ... 27 7.7
AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical ... 27 7.7
AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical ... 27 7.7
AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical ... 27 7.7
AF192746-1|AAF08804.1| 401|Caenorhabditis elegans synapsin prot... 27 7.7
AC006743-3|AAF60504.2| 401|Caenorhabditis elegans Synapsin prot... 27 7.7
AC006743-2|AAM97971.1| 474|Caenorhabditis elegans Synapsin prot... 27 7.7
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 32.3 bits (70), Expect = 0.27
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -3
Query: 404 GNTCS*NQFCSSAALVILERMNNCITPILSSNIVCVC--KYSGLPCLTCFSLLILI 243
GN + C+++ + +CI LSSN+ C C Y+G C T S L LI
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLI 1862
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 32.3 bits (70), Expect = 0.27
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -3
Query: 404 GNTCS*NQFCSSAALVILERMNNCITPILSSNIVCVC--KYSGLPCLTCFSLLILI 243
GN + C+++ + +CI LSSN+ C C Y+G C T S L LI
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLI 1862
>AC087079-12|AAK27874.2| 472|Caenorhabditis elegans Hypothetical
protein Y37E3.13 protein.
Length = 472
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 157 ANKLKFKNTKKAIRDHVDGKYKCTFEQACINISKEKHVKQGN-PLYLQT 300
+ KL+F +R GKYKC A +N SKE HV++ P+ L +
Sbjct: 278 SGKLEFCLEIPKVRLKDMGKYKCVASLAGLNSSKEFHVERDKIPIVLNS 326
>U29377-9|AAA68718.3| 405|Caenorhabditis elegans Hypothetical
protein K05F1.1 protein.
Length = 405
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = -3
Query: 440 SRLNADCRAVHWGNTCS*NQFCSSAALVILERMNNCITPILSSNIVCVCKYSGLPCLTCF 261
S L C+ + + C ++FCS+ L + ++ NN I S N+ C C+
Sbjct: 71 SSLKVTCKLL---SDCQPDEFCST--LGVCDKKNNECLYISSVNVTCKSDCESSTCILLN 125
Query: 260 SLLILIHAC 234
++ IH C
Sbjct: 126 NITKEIHCC 134
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 287 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 376
C C+R Y T+ YSCSC P ++SC
Sbjct: 39 CSCQRTTY--TQPQQYSCSCQNTAPVQKSC 66
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 287 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 376
C C+R Y T+ YSCSC P ++SC
Sbjct: 39 CSCQRTTY--TQPQQYSCSCQNTAPVQKSC 66
>U64844-10|AAB18310.1| 448|Caenorhabditis elegans Hypothetical
protein T22F3.7 protein.
Length = 448
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 73 KFKFGEDTFTLRYVLGGEQPVRFVARDIANKLKF 174
KF E F +LG PVRFV I++KLKF
Sbjct: 309 KFGVTETGFYASLILGISLPVRFVFALISDKLKF 342
>AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical
protein Y5H2A.4 protein.
Length = 558
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 287 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 376
C C+R Y +T+ YSCSC P + SC
Sbjct: 58 CSCQRTTY-TTQPQQYSCSCQNTAPVQASC 86
>Z46787-5|CAA86743.1| 409|Caenorhabditis elegans Hypothetical
protein C16C10.5 protein.
Length = 409
Score = 28.3 bits (60), Expect = 4.4
Identities = 22/62 (35%), Positives = 28/62 (45%)
Frame = +1
Query: 220 KCTFEQACINISKEKHVKQGNPLYLQTQTILLDKIGVIQLFMRSKMTNAAELQNWFYEHV 399
KC F +I K H +G+PLYL ++I KI I R A LQN E +
Sbjct: 36 KCFFR----SIFKIGHFPRGSPLYLLEKSITFSKIISIFSGHRMGQHGAIRLQNEVQEGM 91
Query: 400 LP 405
P
Sbjct: 92 PP 93
>Z22181-9|CAA80186.1| 453|Caenorhabditis elegans Hypothetical
protein ZK632.11 protein.
Length = 453
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 148 RDIANKLKFKNTKKAIRDHVDGKYKCTFEQACINISKEKHVKQG 279
RD + F+ + R+ DG+ + + I+ +EKH K G
Sbjct: 121 RDCTQRKDFRRISRKKRESGDGRQRVFYNDVGISKQREKHFKPG 164
>AF039713-7|AAB96722.1| 203|Caenorhabditis elegans Hypothetical
protein F57B10.5 protein.
Length = 203
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Frame = +1
Query: 88 EDTFTLRYVLGGEQPVRFVARDIANKLKFKNTKKA-----IRDHVDGKYKCTF 231
+ F + V GG V + D K+ +K+TKK + V+G YK F
Sbjct: 41 DTVFEFQVVTGGHYDVDLIIEDPNGKVLYKDTKKQYDSINFKAEVEGTYKACF 93
>U10402-10|AAA19064.1| 355|Caenorhabditis elegans Gro-1 operon gene
protein 2 protein.
Length = 355
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 496 RNGPRRERN*TLLSLGRLGAGSTPTVGRCTGATRVRKT 383
+ GP + ++L LG G+G T V R T RKT
Sbjct: 22 QTGPNVNQKPSILVLGMAGSGKTTFVQRLTAFLHARKT 59
>AY052770-1|AAL14109.1| 355|Caenorhabditis elegans GOP-2 protein.
Length = 355
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 496 RNGPRRERN*TLLSLGRLGAGSTPTVGRCTGATRVRKT 383
+ GP + ++L LG G+G T V R T RKT
Sbjct: 22 QTGPNVNQKPSILVLGMAGSGKTTFVQRLTAFLHARKT 59
>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
protein F25G6.9 protein.
Length = 1373
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 450 GVLEQAQRRLSGGA-LGQHVFVKPILQLRRVGHLGAHE 340
G+L +Q+RL G L Q+VF+K L GH H+
Sbjct: 153 GLLSDSQKRLVGNCGLAQNVFLKHQPDLYPTGHESEHD 190
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = +2
Query: 146 PGTLQTN*NLKTPK-----KQLEITSTASTNAHSSKRV-LISAKKNTL 271
P T QT+ NL TPK K L+ ST T + S V L S ++N L
Sbjct: 100 PSTPQTSSNLNTPKRTPQVKNLQAESTTPTVSRPSSEVDLTSFRRNQL 147
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = +2
Query: 146 PGTLQTN*NLKTPK-----KQLEITSTASTNAHSSKRV-LISAKKNTL 271
P T QT+ NL TPK K L+ ST T + S V L S ++N L
Sbjct: 118 PSTPQTSSNLNTPKRTPQVKNLQAESTTPTVSRPSSEVDLTSFRRNQL 165
>Z68317-3|CAA92687.1| 599|Caenorhabditis elegans Hypothetical
protein T01H3.3 protein.
Length = 599
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 91 DTFTLRYVLGGEQPVRFVARDIANKLKFKNTKKAIRDHVDGKYKCTFEQACINISKE 261
+T T+R V + V D + + T K +RD DGK + EQ N+S E
Sbjct: 132 ETTTVRAVRTTTKKVETTTSDDVVAREVERTLKKLRDAEDGKSESIPEQLFENVSNE 188
>U64844-12|AAB18312.4| 417|Caenorhabditis elegans Hypothetical
protein T22F3.10 protein.
Length = 417
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 73 KFKFGEDTFTLRYVLGGEQPVRFVARDIANKLKFKNTKKAI 195
KF E F + VL P+RFVA ++K +F + K I
Sbjct: 242 KFGITETGFYVALVLFSYMPIRFVAAIFSDKFRFISEKLKI 282
>U41533-7|AAA83170.1| 337|Caenorhabditis elegans Small
glutamine-rich tetratricorepeat protein protein 1
protein.
Length = 337
Score = 27.5 bits (58), Expect = 7.7
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -2
Query: 591 AAIQRNQSPRQVCSLAD----LEQIPFGVQQRRGRIEMALDGSGIKLYCRLGVLEQAQRR 424
AAI+ N+ P C+ A LEQ +Q R +ALD S K + R+G+ Q R
Sbjct: 130 AAIKLNRDPVYFCNRAAAYCRLEQYDLAIQDCR--TALALDPSYSKAWGRMGLAYSCQNR 187
Query: 423 LSGGA 409
A
Sbjct: 188 YEHAA 192
>AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.6 protein.
Length = 335
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 287 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 376
C C+R Y T+ YSCSC P + SC
Sbjct: 39 CSCQRTTY--TQPQQYSCSCQNTAPVQTSC 66
>AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.5 protein.
Length = 335
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 287 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 376
C C+R Y T+ YSCSC P + SC
Sbjct: 39 CSCQRTTY--TQPQQYSCSCQNTAPVQTSC 66
>AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.4 protein.
Length = 335
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 287 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 376
C C+R Y T+ YSCSC P + SC
Sbjct: 39 CSCQRTTY--TQPQQYSCSCQNTAPVQTSC 66
>AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.3 protein.
Length = 335
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 287 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 376
C C+R Y T+ YSCSC P + SC
Sbjct: 39 CSCQRTTY--TQPQQYSCSCQNTAPVQTSC 66
>AF192746-1|AAF08804.1| 401|Caenorhabditis elegans synapsin
protein.
Length = 401
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 351 QDDQRGGAAKLVLRTRVAPVHRPTVGVEPAPRRPSDSKV 467
+DD+R AA L+LR VAP + EP P+ S V
Sbjct: 284 EDDRR--AASLLLRALVAPRITSPIAAEPPATSPTTSAV 320
>AC006743-3|AAF60504.2| 401|Caenorhabditis elegans Synapsin protein
1, isoform a protein.
Length = 401
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 351 QDDQRGGAAKLVLRTRVAPVHRPTVGVEPAPRRPSDSKV 467
+DD+R AA L+LR VAP + EP P+ S V
Sbjct: 284 EDDRR--AASLLLRALVAPRITSPIAAEPPATSPTTSAV 320
>AC006743-2|AAM97971.1| 474|Caenorhabditis elegans Synapsin protein
1, isoform b protein.
Length = 474
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 351 QDDQRGGAAKLVLRTRVAPVHRPTVGVEPAPRRPSDSKV 467
+DD+R AA L+LR VAP + EP P+ S V
Sbjct: 357 EDDRR--AASLLLRALVAPRITSPIAAEPPATSPTTSAV 393
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,261,995
Number of Sequences: 27780
Number of extensions: 277515
Number of successful extensions: 1014
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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