Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18o02
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    26   2.1  
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    25   3.6  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   4.8  
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    25   4.8  
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.8  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    24   8.3  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    24   8.3  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    24   8.3  

>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -2

Query: 216 PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEK 73
           P+ M + S  P+     VY+    + L C   NAK  + LV+ + EE+
Sbjct: 387 PVQMVHRSALPSQDHWKVYELITRRFLACCSDNAKGAETLVQVKMEEE 434


>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 162 YDNKYYKNLGCLIK-NAKRKKHLVEHEQEEKQWDLLDNYMVAED 34
           Y+   Y  L  L K + K+ K + +H+   + W LLD     +D
Sbjct: 238 YEESNYTRLPKLSKKDLKKSKRVKKHDYGGEDWSLLDRKFHDDD 281


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 197 IHTPPPSGVLTCTTINITKTW 135
           I+ PP + ++TC+T  +   W
Sbjct: 300 INNPPSNNIVTCSTDGLVHIW 320


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -2

Query: 192 YTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQ 82
           Y PT  R       Y+     L+KN   K HL +  Q
Sbjct: 173 YNPTAAREAHGLGMYFLAYEALVKNTMAKHHLTDRSQ 209


>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 186 GCMNNSAYL*VFLLQNCYENSKILIYLRDG 275
           GC+N   YL  +L+  C +NSKILI    G
Sbjct: 131 GCLNGR-YLSRYLML-CLQNSKILIVCETG 158


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +3

Query: 141 FCNIYCRTRKYARWWGCMNNSAYL*VFLLQNCYENSKILIYLRDGYYFH 287
           FC   C+  +Y    G ++    L  F+  + Y+N  +L       YFH
Sbjct: 128 FCIAICKCIEYLHSKGMVHGEIRLDSFIPISSYDNVYMLTVGSGASYFH 176


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 203 RIIHTPPPSGVLTCTTINITKTW 135
           +++ TP P+ + +   INI++ W
Sbjct: 323 QLVRTPSPASLSSSELINISRDW 345


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 195 SYTPTIGRTYVY--DNKYYKNLGCLIKNAKR 109
           SY   +GRTY++  D++  KN   L+   K+
Sbjct: 289 SYCSNVGRTYLFDPDSEQQKNYSFLVALQKK 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,398,981
Number of Sequences: 5004
Number of extensions: 28123
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)