Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18n22
(544 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 223 6e-59
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 220 5e-58
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 93 9e-20
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 93 9e-20
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 74 8e-14
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 68 4e-12
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 67 7e-12
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 64 8e-11
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 55 4e-08
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 41 5e-04
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 41 5e-04
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 41 5e-04
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 39 0.002
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 36 0.025
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 36 0.025
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 35 0.033
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 35 0.033
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 35 0.033
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 35 0.033
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.18
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 31 0.41
AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical... 31 0.71
U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone... 30 1.2
AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical ... 30 1.2
AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical ... 30 1.2
AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear recep... 30 1.2
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 30 1.2
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 29 1.6
AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical... 29 1.6
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 29 2.2
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 2.2
U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical pr... 29 2.2
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 2.2
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 29 2.9
Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 27 6.6
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 27 6.6
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 27 6.6
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr... 27 8.7
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 223 bits (545), Expect = 6e-59
Identities = 114/138 (82%), Positives = 123/138 (89%), Gaps = 8/138 (5%)
Frame = +1
Query: 121 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 300
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 301 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGH 456
KDEQ+RCITIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGH
Sbjct: 61 KDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGH 120
Query: 457 VDFSSEVTAALRVTDGAL 510
VDFSSEVTAALRVTDGAL
Sbjct: 121 VDFSSEVTAALRVTDGAL 138
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 220 bits (538), Expect = 5e-58
Identities = 113/138 (81%), Positives = 122/138 (88%), Gaps = 8/138 (5%)
Frame = +1
Query: 121 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 300
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 301 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGH 456
KDEQ+RCITIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGH
Sbjct: 61 KDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGH 120
Query: 457 VDFSSEVTAALRVTDGAL 510
VDFSSEVTAAL VTDGAL
Sbjct: 121 VDFSSEVTAALGVTDGAL 138
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 93.5 bits (222), Expect = 9e-20
Identities = 54/113 (47%), Positives = 72/113 (63%)
Frame = +1
Query: 172 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 351
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 352 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 510
E LINLIDSPGHVDFS EVT+AL ++D AL
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSDIAL 111
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 93.5 bits (222), Expect = 9e-20
Identities = 54/113 (47%), Positives = 72/113 (63%)
Frame = +1
Query: 172 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 351
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 352 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 510
E LINLIDSPGHVDFS EVT+AL ++D AL
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSDIAL 111
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 73.7 bits (173), Expect = 8e-14
Identities = 43/112 (38%), Positives = 63/112 (56%)
Frame = +1
Query: 175 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 354
IRN ++AHVDHGKSTL D L+ G + G+ + D + E++R IT+K+ ++
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERERGITVKAQTAAL- 97
Query: 355 FELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 510
+G+L+NLID+PGHVDFS+EV+ +L V DG L
Sbjct: 98 -------------------RHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGIL 130
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 68.1 bits (159), Expect = 4e-12
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Frame = +1
Query: 154 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITI 330
+MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +I
Sbjct: 125 LMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSI 184
Query: 331 KSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 510
KS +S I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG +
Sbjct: 185 KSQPVS------------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVV 229
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 67.3 bits (157), Expect = 7e-12
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Frame = +1
Query: 157 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITIK 333
MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +IK
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIK 60
Query: 334 STAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 510
S +S I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG +
Sbjct: 61 SQPVS------------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVV 104
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 63.7 bits (148), Expect = 8e-11
Identities = 45/112 (40%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Frame = +1
Query: 175 IRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRFTDTRKDEQDRCITIKSTAIS 348
+RN+ VIAHVD GK+T+T+ L+ AG I AG TD E++R IT++S A++
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAAVN 84
Query: 349 MFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 504
+ + KG INLID+PGHVDF EV +RV DG
Sbjct: 85 LDW--------------------KGHRINLIDTPGHVDFRVEVERCVRVLDG 116
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 54.8 bits (126), Expect = 4e-08
Identities = 41/112 (36%), Positives = 57/112 (50%)
Frame = +1
Query: 175 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 354
IRN+ + AH+D GK+T+T+ ++ AG I E R D D F
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRIDSMH--EVRGKDDVGATMD------------F 89
Query: 355 FELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 510
+LE + + I + G IN+ID+PGHVDF+ EV ALRV DGA+
Sbjct: 90 MDLERQRGITIQSA-ATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAV 140
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 41.1 bits (92), Expect = 5e-04
Identities = 31/110 (28%), Positives = 51/110 (46%)
Frame = +1
Query: 181 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 360
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 108
Query: 361 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 510
++ I P + ++ N+I ++ + V AA TDG +
Sbjct: 109 TAKRHYAHIDCPGHAD-----YIKNMITGAAQMEGAILVVAA---TDGPM 150
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 41.1 bits (92), Expect = 5e-04
Identities = 31/110 (28%), Positives = 51/110 (46%)
Frame = +1
Query: 181 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 360
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 109
Query: 361 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 510
++ I P + ++ N+I ++ + V AA TDG +
Sbjct: 110 TAKRHYAHIDCPGHAD-----YIKNMITGAAQMEGAILVVAA---TDGPM 151
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 41.1 bits (92), Expect = 5e-04
Identities = 31/110 (28%), Positives = 51/110 (46%)
Frame = +1
Query: 181 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 360
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 109
Query: 361 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 510
++ I P + ++ N+I ++ + V AA TDG +
Sbjct: 110 TAKRHYAHIDCPGHAD-----YIKNMITGAAQMEGAILVVAA---TDGPM 151
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 39.1 bits (87), Expect = 0.002
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +1
Query: 169 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS 348
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 221
Query: 349 MFFELEEKDLVFITNPDQREKSEKGF-LINLIDSPGHVDFSSEVTAALRVTDGAL 510
+ E EE+ +T R E I L+D+PGH DF S + D A+
Sbjct: 222 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAI 276
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 39.1 bits (87), Expect = 0.002
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +1
Query: 169 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS 348
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 239
Query: 349 MFFELEEKDLVFITNPDQREKSEKGF-LINLIDSPGHVDFSSEVTAALRVTDGAL 510
+ E EE+ +T R E I L+D+PGH DF S + D A+
Sbjct: 240 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAI 294
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 35.5 bits (78), Expect = 0.025
Identities = 33/110 (30%), Positives = 50/110 (45%)
Frame = +1
Query: 181 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 360
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI I
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGY--- 103
Query: 361 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 510
E L ++ D S+ F+ N+I +D + V AA TDG +
Sbjct: 104 --ESPLRRYSHTDCPGHSD--FIKNMICGTSQMDVAVLVIAA---TDGVM 146
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 35.5 bits (78), Expect = 0.025
Identities = 33/110 (30%), Positives = 50/110 (45%)
Frame = +1
Query: 181 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 360
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI I
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGY--- 103
Query: 361 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 510
E L ++ D S+ F+ N+I +D + V AA TDG +
Sbjct: 104 --ESPLRRYSHTDCPGHSD--FIKNMICGTSQMDVAVLVIAA---TDGVM 146
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 35.1 bits (77), Expect = 0.033
Identities = 35/118 (29%), Positives = 55/118 (46%)
Frame = +1
Query: 157 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 336
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 337 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 510
+ + E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 35.1 bits (77), Expect = 0.033
Identities = 35/118 (29%), Positives = 55/118 (46%)
Frame = +1
Query: 157 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 336
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 337 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 510
+ + E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 35.1 bits (77), Expect = 0.033
Identities = 35/118 (29%), Positives = 55/118 (46%)
Frame = +1
Query: 157 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 336
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 337 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 510
+ + E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 35.1 bits (77), Expect = 0.033
Identities = 35/118 (29%), Positives = 55/118 (46%)
Frame = +1
Query: 157 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 336
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 337 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 510
+ + E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 157 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 252
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 31.5 bits (68), Expect = 0.41
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 160 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 285
D +R ++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
>AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical
protein Y105C5A.23 protein.
Length = 415
Score = 30.7 bits (66), Expect = 0.71
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +2
Query: 212 ASQPSRTRWFPRPVSLLVREPERPVSLTRVRTNKTVASPLNLRPSLCSSSLKRKI*YSSQ 391
AS+ + + F R V+ ++EPE+P++ R+ + PL RPS+ S +
Sbjct: 271 ASEWNPLKTFSRHVN--IKEPEKPMTTPRIVVSDETEVPLTQRPSISPSEASAVMRTGVH 328
Query: 392 TLTS 403
T TS
Sbjct: 329 TSTS 332
>U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 16 protein.
Length = 388
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 389 VMNTKSFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 213
V N K++S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 212 P 210
P
Sbjct: 102 P 102
>AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical
protein Y102A5C.15 protein.
Length = 338
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -3
Query: 443 SIKLIKKPFSLFSRWSGFVMNTKSFSSSSKNIEMAVDLMVMQ 318
S+ L+ PF L +R +G+ + FSS S + MAV ++ +Q
Sbjct: 68 SVTLLGIPFILATRLAGYSLGLLKFSSYSFLVTMAVSVLSLQ 109
>AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical
protein C47F8.8 protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 537 HTRHTVNNHKGSISDTECSCYFRREINV 454
H T H G IS T C+ +FRR I +
Sbjct: 15 HNTETTRRHFGIISCTACAAFFRRSIGM 42
>AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear receptor
NHR-16 protein.
Length = 388
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 389 VMNTKSFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 213
V N K++S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 212 P 210
P
Sbjct: 102 P 102
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 530 DTQSTTTRAPSVTRSAAVTSEEKSTCPGESIK 435
D+ +T R+P TRS ++TS + C G+ I+
Sbjct: 174 DSANTILRSPYSTRSDSITSVDSGQCSGDQIE 205
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = -3
Query: 542 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTK 375
T +T STT+ P +T + + +E T S+ P L RW V K
Sbjct: 703 TTDEETTSTTSTTPEITSTKEIVTESAITQTSVSVVESSTPRQLPERWKAIVNKFK 758
>AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical
protein Y73F8A.1 protein.
Length = 716
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +1
Query: 106 HKPSKMVNFTVDEIRGMMDKKRN-IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGET 282
H P K+ DE+ M ++KRN + N A+++ + +S+ S I G A
Sbjct: 610 HVPEKVAEDIADEVARMTEQKRNYMENHRDYANLNRRVDQMQESVFSIVDRIEGVNATLQ 669
Query: 283 RFTDTRKDEQD 315
R +QD
Sbjct: 670 TIEKQRVQQQD 680
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 29.1 bits (62), Expect = 2.2
Identities = 29/110 (26%), Positives = 44/110 (40%)
Frame = +1
Query: 181 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 360
NM + HVD GKST+ L+ G++ R E + + E+ R S + E
Sbjct: 111 NMVFVGHVDAGKSTIGGQLMFLTGMV-DKRTLEKYEREAK--EKGRESWYLSWCMDTNDE 167
Query: 361 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 510
EK E ++ F I +D+PGH F + D A+
Sbjct: 168 EREKGKTVEVGRAYFETEKRHFTI--LDAPGHKSFVPNMIVGANQADLAV 215
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 542 THTPDTQSTTTRAPSVTRS-AAVTSEEKSTCPGESIKLIKKP 420
T T T +TTT P+ T + A TSE +T P + + KP
Sbjct: 228 TTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKP 269
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 208 DRRGRSQTCCGYSASCPSSHG 146
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical
protein F32E10.3 protein.
Length = 876
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -3
Query: 542 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKK 423
T + +TTT APS T + VT K P E KL+KK
Sbjct: 770 TKPAEETTTTTEAPSTT-TKPVTVAVKKVSPEEMEKLVKK 808
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 208 DRRGRSQTCCGYSASCPSSHG 146
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 123 GEFHGRRDPWDDGQEAEYPQHVCDR 197
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 123 GEFHGRRDPWDDGQEAEYPQHVCDR 197
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical
protein F40E10.5 protein.
Length = 284
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -3
Query: 542 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESI---KLIKKPFSLF 408
T T T +TTT AP++ + + T+E+ +T +I + +K FS F
Sbjct: 218 TTTTTTTTTTTEAPTMPEAVSSTTEQSTTTTAAAIIAEETKEKEFSAF 265
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 181 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 315
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 181 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 315
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 6.6
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -3
Query: 533 PDTQSTTT-RAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSSS 360
P Q T+T P V AA ++ + E PFS SR V NT S SSS
Sbjct: 33 PQNQYTSTPHRPEVLNFAAPSATRLAMRRSEQPVTSSTPFSSSSRPMSAVFNTPSLSSS 91
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 6.6
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -3
Query: 533 PDTQSTTT-RAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSSS 360
P Q T+T P V AA ++ + E PFS SR V NT S SSS
Sbjct: 33 PQNQYTSTPHRPEVLNFAAPSATRLAMRRSEQPVTSSTPFSSSSRPMSAVFNTPSLSSS 91
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 27.5 bits (58), Expect = 6.6
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -3
Query: 536 TPDTQSTTTRAPSVTRSAAVTSEEKSTCP-GESIKLIKKPFSLFSRWSGFVMNTKSFSSS 360
TPD ++TTT P+ T++ + +E+ + G ++ P S+ S SG N+ + ++S
Sbjct: 157 TPDPKATTTPTPTTTKAQNIIAEDPNGGQLGGGELVVTNPGSVGS-GSGNSGNSSNNNNS 215
Query: 359 SKN 351
S N
Sbjct: 216 SGN 218
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 536 TPDTQSTTTRAPSVTRSAAVTSEEKST 456
T + +TTT AP+ T S VT+ E +T
Sbjct: 243 TTEASTTTTEAPTTTTSEEVTTTEITT 269
>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical protein
C27A7.4 protein.
Length = 1403
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 474 FRREINVSR*VNQVDQETFLTLFTLVRVCDE 382
+R + + V VD ETF+ TL +VCDE
Sbjct: 1340 YRAITGLQKKVPNVDLETFVETSTLDKVCDE 1370
>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
protein ZC84.6 protein.
Length = 1474
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 223 GLTCRDRRGRSQTCCGYSASCPSSH 149
G RD G Q+C CPSSH
Sbjct: 607 GSPLRDSNGALQSCSERDGGCPSSH 631
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,671,972
Number of Sequences: 27780
Number of extensions: 263124
Number of successful extensions: 1076
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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