Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18n13
(627 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF001687-1|AAB87640.1| 521|Homo sapiens U4/U6 snRNP 60 kDa prot... 86 1e-16
BC001588-1|AAH01588.1| 522|Homo sapiens PRP4 pre-mRNA processin... 85 2e-16
AL449305-7|CAI10968.1| 522|Homo sapiens PRP4 pre-mRNA processin... 85 2e-16
AF016369-1|AAC51925.1| 522|Homo sapiens U4/U6 small nuclear rib... 85 2e-16
CR457105-1|CAG33386.1| 521|Homo sapiens PRPF4 protein. 85 3e-16
BC007424-1|AAH07424.1| 521|Homo sapiens PRP4 pre-mRNA processin... 85 3e-16
AY572489-1|AAS78572.1| 521|Homo sapiens 60 kDa U4/U6 snRNP-spec... 85 3e-16
AL449305-8|CAI10969.1| 521|Homo sapiens PRP4 pre-mRNA processin... 85 3e-16
AB209797-1|BAD93034.1| 537|Homo sapiens PRPF4 protein variant p... 85 3e-16
U82756-1|AAC02261.1| 520|Homo sapiens WD splicing factor Hprp4p... 49 1e-05
BC095524-1|AAH95524.1| 291|Homo sapiens taste receptor, type 2,... 30 7.7
AY996330-1|AAY21218.1| 95|Homo sapiens immunoglobulin heavy ch... 30 7.7
AY724962-1|AAU21158.1| 291|Homo sapiens taste receptor T2R16 pr... 30 7.7
AF227139-1|AAF43912.1| 291|Homo sapiens candidate taste recepto... 30 7.7
AC004838-1|AAP21892.1| 291|Homo sapiens unknown protein. 30 7.7
AB199134-1|BAD98013.1| 272|Homo sapiens bitter taste receptor T... 30 7.7
AB199133-1|BAD98012.1| 272|Homo sapiens bitter taste receptor T... 30 7.7
AB199132-1|BAD98011.1| 272|Homo sapiens bitter taste receptor T... 30 7.7
>AF001687-1|AAB87640.1| 521|Homo sapiens U4/U6 snRNP 60 kDa protein
protein.
Length = 521
Score = 85.8 bits (203), Expect = 1e-16
Identities = 47/113 (41%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Frame = +2
Query: 290 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 466
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 13 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 72
Query: 467 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGP 625
E+EE IS + LL EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGP
Sbjct: 73 EIEEHISERQAELLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGP 125
>BC001588-1|AAH01588.1| 522|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog (yeast) protein.
Length = 522
Score = 85.0 bits (201), Expect = 2e-16
Identities = 49/119 (41%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Frame = +2
Query: 275 SKQKT-TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI 451
S Q T T + D+ +A + K+ ++YGS G+I I
Sbjct: 8 STQATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINI 67
Query: 452 -SNEYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGP 625
S E E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGP
Sbjct: 68 TSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGP 126
>AL449305-7|CAI10968.1| 522|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog (yeast) protein.
Length = 522
Score = 85.0 bits (201), Expect = 2e-16
Identities = 49/119 (41%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Frame = +2
Query: 275 SKQKT-TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI 451
S Q T T + D+ +A + K+ ++YGS G+I I
Sbjct: 8 STQATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINI 67
Query: 452 -SNEYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGP 625
S E E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGP
Sbjct: 68 TSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGP 126
>AF016369-1|AAC51925.1| 522|Homo sapiens U4/U6 small nuclear
ribonucleoprotein hPrp4 protein.
Length = 522
Score = 85.0 bits (201), Expect = 2e-16
Identities = 49/119 (41%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Frame = +2
Query: 275 SKQKT-TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI 451
S Q T T + D+ +A + K+ ++YGS G+I I
Sbjct: 8 STQATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINI 67
Query: 452 -SNEYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGP 625
S E E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGP
Sbjct: 68 TSGEVFEIEERISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGP 126
>CR457105-1|CAG33386.1| 521|Homo sapiens PRPF4 protein.
Length = 521
Score = 84.6 bits (200), Expect = 3e-16
Identities = 46/113 (40%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Frame = +2
Query: 290 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 466
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 13 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 72
Query: 467 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGP 625
E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGP
Sbjct: 73 EIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGP 125
>BC007424-1|AAH07424.1| 521|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog (yeast) protein.
Length = 521
Score = 84.6 bits (200), Expect = 3e-16
Identities = 46/113 (40%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Frame = +2
Query: 290 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 466
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 13 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 72
Query: 467 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGP 625
E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGP
Sbjct: 73 EIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGP 125
>AY572489-1|AAS78572.1| 521|Homo sapiens 60 kDa U4/U6
snRNP-specific spliceosomal protein protein.
Length = 521
Score = 84.6 bits (200), Expect = 3e-16
Identities = 46/113 (40%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Frame = +2
Query: 290 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 466
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 13 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 72
Query: 467 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGP 625
E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGP
Sbjct: 73 EIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGP 125
>AL449305-8|CAI10969.1| 521|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog (yeast) protein.
Length = 521
Score = 84.6 bits (200), Expect = 3e-16
Identities = 46/113 (40%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Frame = +2
Query: 290 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 466
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 13 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 72
Query: 467 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGP 625
E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGP
Sbjct: 73 EIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGP 125
>AB209797-1|BAD93034.1| 537|Homo sapiens PRPF4 protein variant
protein.
Length = 537
Score = 84.6 bits (200), Expect = 3e-16
Identities = 46/113 (40%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Frame = +2
Query: 290 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 466
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 29 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 88
Query: 467 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGP 625
E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGP
Sbjct: 89 EIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGP 141
>U82756-1|AAC02261.1| 520|Homo sapiens WD splicing factor Hprp4p
protein.
Length = 520
Score = 49.2 bits (112), Expect = 1e-05
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Frame = +2
Query: 290 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 466
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 13 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 72
Query: 467 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGP 625
E+EE + D++ + + DD EV+ LR LGEP+ LFGEGP
Sbjct: 73 EIEEISASDRQKYWLSLREGSEPGRSMFPPDDSEVKACLRALGEPITLFGEGP 125
>BC095524-1|AAH95524.1| 291|Homo sapiens taste receptor, type 2,
member 16 protein.
Length = 291
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -2
Query: 200 LVLIKSFKNLVFVSINSLKTCFYCIEMKIYTNNNYI 93
L + F N++ +NSL T FYCI++ +T++ ++
Sbjct: 81 LTITWEFFNILTFWLNSLLTVFYCIKVSSFTHHIFL 116
>AY996330-1|AAY21218.1| 95|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 95
Score = 29.9 bits (64), Expect = 7.7
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -2
Query: 179 KNLVFVSINSLKT----CFYCIEMKIYTNNNY 96
KN +F+ INSL+ +YC++ K Y +N Y
Sbjct: 51 KNTLFLQINSLRAEDTAVYYCVKDKYYESNGY 82
>AY724962-1|AAU21158.1| 291|Homo sapiens taste receptor T2R16
protein.
Length = 291
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -2
Query: 200 LVLIKSFKNLVFVSINSLKTCFYCIEMKIYTNNNYI 93
L + F N++ +NSL T FYCI++ +T++ ++
Sbjct: 81 LTITWEFFNILTFWLNSLLTVFYCIKVSSFTHHIFL 116
>AF227139-1|AAF43912.1| 291|Homo sapiens candidate taste receptor
T2R16 protein.
Length = 291
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -2
Query: 200 LVLIKSFKNLVFVSINSLKTCFYCIEMKIYTNNNYI 93
L + F N++ +NSL T FYCI++ +T++ ++
Sbjct: 81 LTITWEFFNILTFWLNSLLTVFYCIKVSSFTHHIFL 116
>AC004838-1|AAP21892.1| 291|Homo sapiens unknown protein.
Length = 291
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -2
Query: 200 LVLIKSFKNLVFVSINSLKTCFYCIEMKIYTNNNYI 93
L + F N++ +NSL T FYCI++ +T++ ++
Sbjct: 81 LTITWEFFNILTFWLNSLLTVFYCIKVSSFTHHIFL 116
>AB199134-1|BAD98013.1| 272|Homo sapiens bitter taste receptor
T2R16 protein.
Length = 272
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -2
Query: 200 LVLIKSFKNLVFVSINSLKTCFYCIEMKIYTNNNYI 93
L + F N++ +NSL T FYCI++ +T++ ++
Sbjct: 72 LTITWEFFNILTFWLNSLLTVFYCIKVSSFTHHIFL 107
>AB199133-1|BAD98012.1| 272|Homo sapiens bitter taste receptor
T2R16 protein.
Length = 272
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -2
Query: 200 LVLIKSFKNLVFVSINSLKTCFYCIEMKIYTNNNYI 93
L + F N++ +NSL T FYCI++ +T++ ++
Sbjct: 72 LTITWEFFNILTFWLNSLLTVFYCIKVSSFTHHIFL 107
>AB199132-1|BAD98011.1| 272|Homo sapiens bitter taste receptor
T2R16 protein.
Length = 272
Score = 29.9 bits (64), Expect = 7.7
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -2
Query: 200 LVLIKSFKNLVFVSINSLKTCFYCIEMKIYTNNNYI 93
L + F N++ +NSL T FYCI++ +T++ ++
Sbjct: 72 LTITWEFFNILTFWLNSLLTVFYCIKVSSFTHHIFL 107
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,616,255
Number of Sequences: 237096
Number of extensions: 1090852
Number of successful extensions: 2417
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2417
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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