Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18n11
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 48 2e-06
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 44 1e-05
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 30 0.25
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 30 0.33
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi... 27 1.8
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 27 1.8
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 3.1
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 27 3.1
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 27 3.1
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 3.1
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 26 4.0
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.0
SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces... 26 5.3
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 5.3
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 5.3
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe... 26 5.3
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 26 5.3
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb... 26 5.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 5.3
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote... 25 9.3
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.3
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 47.6 bits (108), Expect = 2e-06
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +3
Query: 459 EVIRSTKLPIARIKNIMKMDPDV--NIVSSDAVFLVTKATEMFLETIVKETYAFTSSNKR 632
+ +++ LP+ARIK +MK D DV ++S++A FL K +E+F+ + + N+R
Sbjct: 102 QAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHAKKNQR 161
Query: 633 KVI 641
+ +
Sbjct: 162 RTL 164
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 44.4 bits (100), Expect = 1e-05
Identities = 21/68 (30%), Positives = 40/68 (58%)
Frame = +3
Query: 441 EKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKETYAFTS 620
E K ++ P+ARIK IM+ D DV V+ +++KA E+F+++I++E+ T
Sbjct: 11 ETKPNPATYWKSRFPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTR 70
Query: 621 SNKRKVIS 644
++ K ++
Sbjct: 71 LHQAKRVT 78
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 30.3 bits (65), Expect = 0.25
Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +3
Query: 270 LQNMSEEECHEDVDISDITEHSES---YLENEHLKFALTEATEADNNKLEFELNSEEQVH 440
++ ++E H+ DI D+ + + +++N HL + + ++FE+ E VH
Sbjct: 2007 IERCNKEGVHDVFDIIDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVH 2066
Query: 441 EKKQKTEVIRSTK 479
+++ T+
Sbjct: 2067 ANSPSVLIVQLTR 2079
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 306 VDISDITEHSESYLEN--EHLKFALTEATEADNNKLE 410
VD++D+T H + L+N E L F+ E ++ D N+ E
Sbjct: 31 VDVADVTTHVDEDLDNKEEALDFSEDELSDLDENQFE 67
>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
Tom22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/49 (22%), Positives = 28/49 (57%)
Frame = +3
Query: 300 EDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEK 446
E VD +++ ++ +E + +A + E+D+++ +FE EE + ++
Sbjct: 6 EVVDETEVQNEQQTVIEKDQYIYAQEDVEESDSDESDFEGLEEETIIDR 54
>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +3
Query: 354 EHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNI 533
EH K A+ A + N +E EQ+ K T+++RS IKN +K D
Sbjct: 235 EHCKSAVRSAEDELNGAIEHAKILYEQILNKDYNTDLLRSI------IKNQLKFHQDAAA 288
Query: 534 VSSD 545
SD
Sbjct: 289 ALSD 292
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/78 (24%), Positives = 37/78 (47%)
Frame = +3
Query: 228 RKRLLLHRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKL 407
+K+ + + S ++ EEE E + S++++ SES E+E E +E++
Sbjct: 71 KKKAVAASEDSESDSESSEEEEETESEEDSEVSDESESESESES---ESEEESESEEESD 127
Query: 408 EFELNSEEQVHEKKQKTE 461
E E + +K +K E
Sbjct: 128 ESERSGPSSFLKKPEKEE 145
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 139 FILRLSKITLSAYY*LSSACKTILARRYILEKDYYYTVNINLHRYKIC 282
F L K+ + Y +SS CK+IL + ++ + +T+N KIC
Sbjct: 86 FSLVSMKVPFTVYLIISSQCKSILEDDAVEKEIFSFTINPGSEE-KIC 132
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 3.1
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Frame = +3
Query: 273 QNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADN---NKLEFELNSEEQVHE 443
+ +SE+ E D+ +I + LE+E + +E DN N + E+ +E +
Sbjct: 225 EKLSEQAKRERDDLKNIMQ-----LEDESVSTTSVHDSEDDNLDSNNFQLEIGTEAKSAA 279
Query: 444 KKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKETYAFTSS 623
+ E+I+S R K +K + FLVTK E++ E + +S
Sbjct: 280 PDEPQEIIKSVSGGKRRGKRKVK---KYATTKDEEGFLVTKEEEVWESFSEDENISTGTS 336
Query: 624 N 626
N
Sbjct: 337 N 337
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.6 bits (56), Expect = 3.1
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +3
Query: 264 SSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHE 443
SS N+S ++ + I+ +T++ + Y+E HL+F + L L S
Sbjct: 132 SSNPNISRKQSFIEYLIAKLTDNIQIYIERIHLRFEDNLSDLEKPYSLGLTLYSLRVTST 191
Query: 444 KKQKTEVIRST-KLPIARIKNIMKMD 518
TE + ST +P + I I+ +D
Sbjct: 192 DASFTEYLLSTDPIPSSCIHKIITVD 217
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 312 ISDITEHSESYLENEHLKFALTEATEADNNKLEF 413
I+ I +HS SY + + E D NKL F
Sbjct: 215 IASILQHSNSYFDQHTISSITDERDLEDKNKLPF 248
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 4.0
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = +3
Query: 420 NSEEQVHEKKQKTEV-IR--STKLPIARIKNIMKMD---PDVNIVSSDAVFLVTKATEMF 581
+SE+ +++ K E+ ++ ST +A +I+ MD P +I SSD FL+ + +
Sbjct: 99 DSEDDLYQMYSKFEMQVKKLSTNYGLAVAFSIVPMDDDQPSPSIFSSDESFLIVEGDDFS 158
Query: 582 LETIVKETYAFTS 620
L V+E TS
Sbjct: 159 LGNSVEEDANATS 171
>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 540 SDAVFLVTKAT-EMFLETIVKETYAFTSSNKRKVIS 644
S V+ T+A ++FLE ++++ +T KRK ++
Sbjct: 48 SALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVT 83
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = +3
Query: 285 EEECHEDVDISDITEHSESYL-------ENEHLKFALTEATEADNNKLEFELNSEEQVHE 443
+E+ E++D +I E S+ + +NE L+ L + E + K++ E +SEE++
Sbjct: 690 DEDDFEEIDTDEIEEQSDWEMISNQDASDNEELERKLDKVLEDADAKVKDEESSEEELMN 749
Query: 444 KKQ 452
+Q
Sbjct: 750 DEQ 752
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +3
Query: 258 KPSSLQNMSEEECHED--VDISDITEHSESYLENEHLKFALTEATEADN 398
K SS +N S E E VD ++ HS + E EH K + + + N
Sbjct: 3 KNSSHENQSSENIIEFPYVDFEELNVHSNIFSELEHAKPSTQQQQQQQN 51
>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 540 SDAVFLVTKAT-EMFLETIVKETYAFTSSNKRKVIS 644
S V+ T+A ++FLE ++++ +T KRK ++
Sbjct: 48 SALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVT 83
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = +3
Query: 282 SEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTE 461
SE E ++D SDI + + LE + + + + N+K + +++ + E +
Sbjct: 182 SESEASLEID-SDIKDEKQKSLEEQKIAPEIPVKQQIKNDKEALGIQAQQLLEEPVENLH 240
Query: 462 VIRS 473
+IR+
Sbjct: 241 LIRN 244
>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 540 SDAVFLVTKAT-EMFLETIVKETYAFTSSNKRKVIS 644
S V+ T+A ++FLE ++++ +T KRK ++
Sbjct: 48 SALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVT 83
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 5.3
Identities = 20/68 (29%), Positives = 40/68 (58%)
Frame = +3
Query: 393 DNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKAT 572
+NN L+ + +S+ ++EK + ++ T L I R NI++ DP V D+++L+
Sbjct: 945 ENNDLKSKFSSD--MYEKLRG--FLKPTNLTIQR--NIIEFDPPVYRKKEDSIYLL---- 994
Query: 573 EMFLETIV 596
+M L+++V
Sbjct: 995 DMCLQSVV 1002
>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
But1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 387 EADNNKLEFELNSEEQVHEKKQKTEVIRSTK 479
E D N +F +++ + VHE K T ++STK
Sbjct: 2 EIDQNLFQFPISTRDAVHE-KNCTLRVKSTK 31
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 255 YKPSSLQNMSEEECHEDVDI 314
Y+PSSLQ + + H VD+
Sbjct: 314 YQPSSLQPLESRKLHSKVDV 333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,797
Number of Sequences: 5004
Number of extensions: 38670
Number of successful extensions: 171
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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