Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18n11
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-3|CAB61070.1|  179|Caenorhabditis elegans Hypothetical ...    55   4e-08
AF024493-10|AAK68346.1|  232|Caenorhabditis elegans C. elegans N...    44   7e-05
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ...    36   0.019
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ...    36   0.019
AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical ...    31   0.53 
U00057-1|AAA50726.2|  347|Caenorhabditis elegans Hypothetical pr...    31   0.70 
AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z79695-4|CAB01969.3|  374|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF101316-2|AAC69230.1|  692|Caenorhabditis elegans Hypothetical ...    28   4.9  
AC006661-10|AAF39887.1|  843|Caenorhabditis elegans Hypothetical...    28   4.9  
Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z78199-2|CAB54275.1|  582|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF108229-2|AAF17301.1|  582|Caenorhabditis elegans VAB-8S protein.     28   6.5  
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.     28   6.5  
Z83103-9|CAI79157.1|  376|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U40029-12|AAA81131.1|  785|Caenorhabditis elegans Temporarily as...    27   8.6  
AC090999-12|ABD63206.1|  257|Caenorhabditis elegans Hypothetical...    27   8.6  

>AL132949-3|CAB61070.1|  179|Caenorhabditis elegans Hypothetical
           protein Y53F4B.3 protein.
          Length = 179

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 23/73 (31%), Positives = 47/73 (64%)
 Frame = +3

Query: 423 SEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKE 602
           SEE V E ++  E +  ++LP+ R+K +++M+PDV +++++A+ L+ KA E+F++ +   
Sbjct: 17  SEEDVREIEEHVEELVRSQLPLGRVKKVVRMNPDVEMLNNEALQLMAKAAELFIKELSNA 76

Query: 603 TYAFTSSNKRKVI 641
                +  KRK +
Sbjct: 77  ANQNAALEKRKTV 89


>AF024493-10|AAK68346.1|  232|Caenorhabditis elegans C. elegans
           NFYC-1 protein protein.
          Length = 232

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 11/84 (13%)
 Frame = +3

Query: 423 SEEQVHEKKQK-TEVI--------RSTKLPIARIKNIMKMDPDVN--IVSSDAVFLVTKA 569
           +E+   EKKQK TE+         ++  +P+AR+K IM++D DV   +++SDA   + +A
Sbjct: 82  TEDFWREKKQKMTEISEEDMLNKSKNMSVPMARVKKIMRIDDDVRNFMIASDAPIFMAQA 141

Query: 570 TEMFLETIVKETYAFTSSNKRKVI 641
            E F+E +    + + S  +R+++
Sbjct: 142 AEFFIEEMTAMGWQYVSEARRRIL 165


>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 6, isoform a protein.
          Length = 1724

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 23/86 (26%), Positives = 45/86 (52%)
 Frame = +3

Query: 261 PSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVH 440
           P ++ N+  E+ +E+ D  +  E  E   ENE    A+ E  ++D +  E + ++EE V 
Sbjct: 429 PGAIPNLDAEQ-NEEEDEEEEGEDEEEEEENEQDDVAVKEEEQSDKSDEENDGDNEENVS 487

Query: 441 EKKQKTEVIRSTKLPIARIKNIMKMD 518
           +KK++ +  +  K     +K + +MD
Sbjct: 488 KKKEEKKKEKKAK----EVKEVGRMD 509


>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 6, isoform b protein.
          Length = 1758

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 23/86 (26%), Positives = 45/86 (52%)
 Frame = +3

Query: 261 PSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVH 440
           P ++ N+  E+ +E+ D  +  E  E   ENE    A+ E  ++D +  E + ++EE V 
Sbjct: 429 PGAIPNLDAEQ-NEEEDEEEEGEDEEEEEENEQDDVAVKEEEQSDKSDEENDGDNEENVS 487

Query: 441 EKKQKTEVIRSTKLPIARIKNIMKMD 518
           +KK++ +  +  K     +K + +MD
Sbjct: 488 KKKEEKKKEKKAK----EVKEVGRMD 509


>AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical
           protein W10D9.4 protein.
          Length = 403

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +3

Query: 438 HEKKQKTEVIRSTKLPIARIKNIMK--MDPDVNIVSSDAVFLVTKATEMFLETIVKETYA 611
           H  K +  + +   LPIA +  IMK  MDP   + + DA     +    F+  I  E   
Sbjct: 52  HPNKSQVLLDQERFLPIANVVRIMKTQMDPQAKL-AKDAKECAQECVSEFISFIASEAAE 110

Query: 612 FTSSNKRKVIS 644
             +  KRK I+
Sbjct: 111 ICNITKRKTIT 121


>U00057-1|AAA50726.2|  347|Caenorhabditis elegans Hypothetical
           protein T24G10.2 protein.
          Length = 347

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +3

Query: 420 NSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAV 551
           +  E+  EKK+KTE ++  +LP+ + K  +K D D +    DAV
Sbjct: 86  SDHEEGEEKKEKTEKVKKEELPV-KAKKEVKEDSDSDSGVEDAV 128


>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 42  FCFLFKYCSCFFTNYKLNFLYLIQ*IKLLNKLFYSAIVKDY 164
           F   F YCS  F  Y L  + L++  K     F+  ++ DY
Sbjct: 8   FILAFGYCSISFVIYTLLIIMLLKNWKDFKSAFFHIVIADY 48


>Z79695-4|CAB01969.3|  374|Caenorhabditis elegans Hypothetical
           protein F27D4.4a protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +3

Query: 282 SEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTE 461
           SE++  E V I D T   ++   N++ KF      +  NN    +L  +++  +KK+K E
Sbjct: 12  SEQKRKEKV-IEDKTFGLKNKKGNKNQKFVAQVENQVRNNNTRMDLVRQQEAAKKKEKDE 70

Query: 462 VI 467
           ++
Sbjct: 71  LL 72


>AF101316-2|AAC69230.1|  692|Caenorhabditis elegans Hypothetical
           protein F52F10.4 protein.
          Length = 692

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 568 ALVTKNTASLDTIFTSGSIF--IMFLILAIGSFVDLI 464
           A  TKN    DT F   SIF  +M +I AI S VD +
Sbjct: 166 AYCTKNEVKKDTPFWGFSIFLIVMVVIAAIASIVDYV 202


>AC006661-10|AAF39887.1|  843|Caenorhabditis elegans Hypothetical
           protein H20J04.1 protein.
          Length = 843

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 255 YKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKL 407
           YK   L  +S  +    V IS    +  SYLE+ H    + + T AD N L
Sbjct: 251 YKKVDLTRVSATQVGTGVAISPFFSNVLSYLESSHAIKFIEKLTNADKNTL 301


>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical
           protein K12F2.2a protein.
          Length = 1066

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 264 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEADNNKLE 410
           +S+QN+   + + D+D+S++    + Y    HL ++A+    E + NKL+
Sbjct: 644 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 689


>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical
           protein K12F2.2a protein.
          Length = 1066

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 264 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEADNNKLE 410
           +S+QN+   + + D+D+S++    + Y    HL ++A+    E + NKL+
Sbjct: 644 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 689


>Z78199-2|CAB54275.1|  582|Caenorhabditis elegans Hypothetical
           protein K12F2.2b protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 264 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEADNNKLE 410
           +S+QN+   + + D+D+S++    + Y    HL ++A+    E + NKL+
Sbjct: 160 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 205


>AF108229-2|AAF17301.1|  582|Caenorhabditis elegans VAB-8S protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 264 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEADNNKLE 410
           +S+QN+   + + D+D+S++    + Y    HL ++A+    E + NKL+
Sbjct: 160 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 205


>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
          Length = 1066

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 264 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEADNNKLE 410
           +S+QN+   + + D+D+S++    + Y    HL ++A+    E + NKL+
Sbjct: 644 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 689


>Z83103-9|CAI79157.1|  376|Caenorhabditis elegans Hypothetical
           protein D1025.10 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = +3

Query: 303 DVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKL 482
           D  ++D+ E     +E E       EA E     +E     EE+V E K+K E +R    
Sbjct: 121 DESMADVMEEINQEVEEEEEG----EAEEGQEEVVEEVEEDEEEVEEIKEKVEEVREVTP 176

Query: 483 PIARIKNIMK 512
           P   I  + K
Sbjct: 177 PKDLINGMPK 186


>U40029-12|AAA81131.1|  785|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 151 protein.
          Length = 785

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 285 EEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVH 440
           EE+  ED+D SD  E  +   E E +    +EA E   +++ F+   +E ++
Sbjct: 384 EEDSDEDMDDSDNEEVEDDSEEEEPMDDLKSEAGETTASEMMFDDGIDEDIN 435


>AC090999-12|ABD63206.1|  257|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.23 protein.
          Length = 257

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/71 (23%), Positives = 29/71 (40%)
 Frame = +3

Query: 231 KRLLLHRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLE 410
           K L +   Y    ++   E     D+DI    +    YL+ EH        T+  N    
Sbjct: 62  KELRVEDYYPRRDVKKFQEVREGNDLDILQSFDDESEYLDKEHSSRIRDLETKKRNCIAN 121

Query: 411 FELNSEEQVHE 443
           F+L ++++V E
Sbjct: 122 FKLKNKKEVEE 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,451,004
Number of Sequences: 27780
Number of extensions: 210093
Number of successful extensions: 825
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)