Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18n11
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.47 
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           25   0.63 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.3  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   4.4  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   4.4  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   4.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.7  

>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 46  VFYLNTVAVFLRITNLI 96
           V++LN  +VF+RI NLI
Sbjct: 235 VYFLNMASVFMRIFNLI 251


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 573 EMFLETIVKETYAFTSSNKRKVIS 644
           ++FLE ++++   +T   KRK ++
Sbjct: 60  KVFLENVIRDAVTYTEHTKRKTVT 83


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 545 IARYNIYIWVHFHNVFNSRYRKLCR 471
           I  Y IYIW       + ++RKL R
Sbjct: 543 IPGYMIYIWFTTSGTISEKFRKLIR 567


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 545 IARYNIYIWVHFHNVFNSRYRKLCR 471
           I  Y IYIW       + ++RKL R
Sbjct: 596 IPGYMIYIWFTTSGTISEKFRKLIR 620


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 52  YLNTVAVFLRITNLI 96
           +LN  +VF+RI NLI
Sbjct: 269 FLNMASVFMRIFNLI 283


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = +3

Query: 246 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 425
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 56  YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 115

Query: 426 EEQV 437
            EQ+
Sbjct: 116 IEQI 119


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = +3

Query: 246 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 425
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 56  YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 115

Query: 426 EEQV 437
            EQ+
Sbjct: 116 IEQI 119


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = +3

Query: 246 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 425
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 56  YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 115

Query: 426 EEQV 437
            EQ+
Sbjct: 116 IEQI 119


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = +3

Query: 246 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 425
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 56  YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 115

Query: 426 EEQV 437
            EQ+
Sbjct: 116 IEQI 119


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = +3

Query: 246 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 425
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 56  YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 115

Query: 426 EEQV 437
            EQ+
Sbjct: 116 IEQI 119


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = +3

Query: 246 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 425
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 56  YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 115

Query: 426 EEQV 437
            EQ+
Sbjct: 116 IEQI 119


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = +3

Query: 246 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 425
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 56  YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 115

Query: 426 EEQV 437
            EQ+
Sbjct: 116 IEQI 119


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = +3

Query: 246 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 425
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 56  YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 115

Query: 426 EEQV 437
            EQ+
Sbjct: 116 IEQI 119


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = +3

Query: 246 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 425
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 289 YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 348

Query: 426 EEQV 437
            EQ+
Sbjct: 349 IEQI 352


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = +3

Query: 246 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 425
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 289 YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 348

Query: 426 EEQV 437
            EQ+
Sbjct: 349 IEQI 352


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 30  TVFVFCFLFKYC 65
           TVFVF  L +YC
Sbjct: 315 TVFVFMALMEYC 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,979
Number of Sequences: 438
Number of extensions: 2930
Number of successful extensions: 19
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)