Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18n02
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   3.8  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    24   6.7  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        24   8.8  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    24   8.8  

>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -2

Query: 245 EFSCVNRPIGVHFPHPTKCNAFYMCVGINHRLELL 141
           E SCV+  IGV       CNA   C G     E+L
Sbjct: 381 EMSCVDADIGVRVASIRLCNAMRTC-GFLENSEIL 414


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 153 SMIYTDTHVKSITFSRMRKMYSNWSVNATEL 245
           S+ YT T   S TF+     YSN SV  T +
Sbjct: 329 SVTYTGTGTGSATFTSSPPFYSNSSVIPTSV 359



 Score = 24.2 bits (50), Expect = 6.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 153 SMIYTDTHVKSITFSRMRKMYSNWSVNATEL 245
           S+ YT T   S TF+     YSN SV  T +
Sbjct: 383 SITYTGTGTGSATFTSSPPFYSNSSVIPTSV 413


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 158 HRLELLCSEGFEFDPNVKDCVPISDYGCTANQ 63
           H++ELL  E  E DP+V  C   +D G + +Q
Sbjct: 593 HQVELLVGEYGEEDPDVIVCYIGADDGKSPDQ 624


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 372 FFF*NIHNSLFVFYNYF 322
           FF    HN +FVF +YF
Sbjct: 188 FFLKQYHNFMFVFRDYF 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 898,326
Number of Sequences: 5004
Number of extensions: 12795
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)