Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18m20
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...   108   2e-25
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    23   8.5  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    23   8.5  

>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score =  108 bits (260), Expect = 2e-25
 Identities = 44/52 (84%), Positives = 47/52 (90%)
 Frame = +3

Query: 162 RFEVKKWNAVXLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW 317
           RFE+KKWNAV LW WDIVVDNCAICRNHIMDLCIECQAN  SA ++ECTVAW
Sbjct: 20  RFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIECQANTDSAAAQECTVAW 71


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 150  GDKKRFEVKKWNAV 191
            G+  RFEVK WN V
Sbjct: 1538 GNAYRFEVKDWNLV 1551


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 217 STTVLFAEIT*WICVSNAKQIKPQPLVKN 303
           S++VL  + T WI  S+A + + Q  VKN
Sbjct: 602 SSSVLHEKKTPWIMYSSAVESETQIFVKN 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,232,482
Number of Sequences: 5004
Number of extensions: 20636
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)