Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18m20
         (319 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119265-1|AAM51125.1|  108|Drosophila melanogaster SD23839p pro...   131   2e-31
AE014298-84|AAF45536.1|  108|Drosophila melanogaster CG16982-PA ...   131   2e-31
AL031581-10|CAA20888.1|  136|Drosophila melanogaster EG:115C2.11...   110   5e-27
AY070810-1|AAL48432.1|  122|Drosophila melanogaster AT21612p pro...    89   2e-18
AF218290-1|AAF32313.1|  107|Drosophila melanogaster ring finger ...    89   2e-18
AE014296-95|AAF47382.1|  122|Drosophila melanogaster CG16988-PA ...    89   2e-18
AY113544-1|AAM29549.1|  113|Drosophila melanogaster RE61847p pro...    68   2e-12
AE013599-1329|AAF58633.2|  113|Drosophila melanogaster CG8998-PA...    68   2e-12
AJ251510-1|CAB63945.1|   85|Drosophila melanogaster putative APC...    38   0.002
X07656-1|CAA30502.1|  273|Drosophila melanogaster protein ( Dros...    27   5.2  
AY051605-1|AAK93029.1|  600|Drosophila melanogaster GH24627p pro...    27   6.9  
AE014296-1250|AAF50567.2|  600|Drosophila melanogaster CG32380-P...    27   6.9  
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    26   9.1  

>AY119265-1|AAM51125.1|  108|Drosophila melanogaster SD23839p
           protein.
          Length = 108

 Score =  131 bits (316), Expect = 2e-31
 Identities = 56/57 (98%), Positives = 56/57 (98%)
 Frame = +3

Query: 147 KGDKKRFEVKKWNAVXLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW 317
           KGDKKRFEVKKWNAV LWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW
Sbjct: 16  KGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW 72


>AE014298-84|AAF45536.1|  108|Drosophila melanogaster CG16982-PA
           protein.
          Length = 108

 Score =  131 bits (316), Expect = 2e-31
 Identities = 56/57 (98%), Positives = 56/57 (98%)
 Frame = +3

Query: 147 KGDKKRFEVKKWNAVXLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW 317
           KGDKKRFEVKKWNAV LWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW
Sbjct: 16  KGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW 72


>AL031581-10|CAA20888.1|  136|Drosophila melanogaster EG:115C2.11
           protein.
          Length = 136

 Score =  110 bits (265), Expect(2) = 5e-27
 Identities = 46/48 (95%), Positives = 47/48 (97%)
 Frame = +3

Query: 174 KKWNAVXLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW 317
           K+WNAV LWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW
Sbjct: 53  KQWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW 100



 Score = 27.1 bits (57), Expect(2) = 5e-27
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 147 KGDKKRFEVKK 179
           KGDKKRFEVKK
Sbjct: 16  KGDKKRFEVKK 26


>AY070810-1|AAL48432.1|  122|Drosophila melanogaster AT21612p
           protein.
          Length = 122

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 36/53 (67%), Positives = 43/53 (81%)
 Frame = +3

Query: 159 KRFEVKKWNAVXLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW 317
           +RF VKKW A  +W WD+ VDNCAICRNHIM+LCIECQA+  +A  +ECTVAW
Sbjct: 35  ERFVVKKWVAHAMWGWDVAVDNCAICRNHIMNLCIECQAD-PNANQDECTVAW 86


>AF218290-1|AAF32313.1|  107|Drosophila melanogaster ring finger
           protein ROC1B protein.
          Length = 107

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 36/53 (67%), Positives = 43/53 (81%)
 Frame = +3

Query: 159 KRFEVKKWNAVXLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW 317
           +RF VKKW A  +W WD+ VDNCAICRNHIM+LCIECQA+  +A  +ECTVAW
Sbjct: 20  ERFVVKKWVAHAMWGWDVAVDNCAICRNHIMNLCIECQAD-PNANQDECTVAW 71


>AE014296-95|AAF47382.1|  122|Drosophila melanogaster CG16988-PA
           protein.
          Length = 122

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 36/53 (67%), Positives = 43/53 (81%)
 Frame = +3

Query: 159 KRFEVKKWNAVXLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW 317
           +RF VKKW A  +W WD+ VDNCAICRNHIM+LCIECQA+  +A  +ECTVAW
Sbjct: 35  ERFVVKKWVAHAMWGWDVAVDNCAICRNHIMNLCIECQAD-PNANQDECTVAW 86


>AY113544-1|AAM29549.1|  113|Drosophila melanogaster RE61847p
           protein.
          Length = 113

 Score = 68.1 bits (159), Expect = 2e-12
 Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
 Frame = +3

Query: 156 KKRFEVKKWNAVXLWAWDIVVDNCAICRNHIMDLCIECQANQASAT--SEECTVAW 317
           +K F +KKWNAV +W+WD+  D CAICR  +MD C+ CQA+        ++C V W
Sbjct: 22  EKMFTLKKWNAVAMWSWDVECDICAICRVQVMDSCLRCQADNKRDVMGRQDCVVVW 77


>AE013599-1329|AAF58633.2|  113|Drosophila melanogaster CG8998-PA
           protein.
          Length = 113

 Score = 68.1 bits (159), Expect = 2e-12
 Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
 Frame = +3

Query: 156 KKRFEVKKWNAVXLWAWDIVVDNCAICRNHIMDLCIECQANQASAT--SEECTVAW 317
           +K F +KKWNAV +W+WD+  D CAICR  +MD C+ CQA+        ++C V W
Sbjct: 22  EKMFTLKKWNAVAMWSWDVECDICAICRVQVMDSCLRCQADNKRDVMGRQDCVVVW 77


>AJ251510-1|CAB63945.1|   85|Drosophila melanogaster putative APC11
           anaphase-promotingcomplex subunit protein.
          Length = 85

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 171 VKKWNAVXLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW 317
           +K W  V  W W    +NC ICR      C EC     +   ++C + W
Sbjct: 5   IKSWTGVATWRWIANDENCGICRMSFESTCPEC-----ALPGDDCPLVW 48


>X07656-1|CAA30502.1|  273|Drosophila melanogaster protein (
           Drosophila melanogasterretrotransposon 1731 sequence. ).
          Length = 273

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 207 DIVVDNCAICRNHIMDLCIECQANQASATSEECTV 311
           D+V  NC   R H    C   + N+ SAT E+C++
Sbjct: 223 DVVCYNCGE-RRHFKANCRREKVNKESATQEQCSL 256


>AY051605-1|AAK93029.1|  600|Drosophila melanogaster GH24627p
           protein.
          Length = 600

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 296 TSG*GLICLAFDTQIHYVISANSTVVDNNIPSPE 195
           + G GL+ +  +T+ HY+ +A    + N  P PE
Sbjct: 15  SEGGGLVTMDQETRTHYLDAATDKHLTNGSPDPE 48


>AE014296-1250|AAF50567.2|  600|Drosophila melanogaster CG32380-PA,
           isoform A protein.
          Length = 600

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 296 TSG*GLICLAFDTQIHYVISANSTVVDNNIPSPE 195
           + G GL+ +  +T+ HY+ +A    + N  P PE
Sbjct: 15  SEGGGLVTMDQETRTHYLDAATDKHLTNGSPDPE 48


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
            protein.
          Length = 23015

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 179  VECSXTLGLGYCCRQLCYLPKSHN 250
            V C    G GY CR    LP  HN
Sbjct: 2946 VACDGECGPGYTCRDSMCLPVCHN 2969


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,086,265
Number of Sequences: 53049
Number of extensions: 224780
Number of successful extensions: 498
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 652945002
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)