Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18m20
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70757-5|CAA94801.1|  110|Caenorhabditis elegans Hypothetical pr...   111   8e-26
AB077287-1|BAB83695.1|  101|Caenorhabditis elegans RING-H2 finge...   111   8e-26
U80449-2|AAB37826.1|  112|Caenorhabditis elegans Hypothetical pr...    68   1e-12
U39742-5|AAK39199.1|  767|Caenorhabditis elegans Hypothetical pr...    26   6.8  

>Z70757-5|CAA94801.1|  110|Caenorhabditis elegans Hypothetical
           protein ZK287.5 protein.
          Length = 110

 Score =  111 bits (268), Expect = 8e-26
 Identities = 46/54 (85%), Positives = 49/54 (90%)
 Frame = +3

Query: 156 KKRFEVKKWNAVXLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW 317
           KKRFEVKKW+AV LWAWDI VDNCAICRNHIMDLCIECQANQA+   +ECTVAW
Sbjct: 21  KKRFEVKKWSAVALWAWDIQVDNCAICRNHIMDLCIECQANQAAGLKDECTVAW 74


>AB077287-1|BAB83695.1|  101|Caenorhabditis elegans RING-H2 finger
           protein Rbx1 protein.
          Length = 101

 Score =  111 bits (268), Expect = 8e-26
 Identities = 46/54 (85%), Positives = 49/54 (90%)
 Frame = +3

Query: 156 KKRFEVKKWNAVXLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW 317
           KKRFEVKKW+AV LWAWDI VDNCAICRNHIMDLCIECQANQA+   +ECTVAW
Sbjct: 12  KKRFEVKKWSAVALWAWDIQVDNCAICRNHIMDLCIECQANQAAGLKDECTVAW 65


>U80449-2|AAB37826.1|  112|Caenorhabditis elegans Hypothetical
           protein R10A10.2 protein.
          Length = 112

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 27/55 (49%), Positives = 36/55 (65%)
 Frame = +3

Query: 153 DKKRFEVKKWNAVXLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW 317
           + + F +KKWNA+ +WAWD+  D CAICR H+M+ C+ CQ    S  S EC V W
Sbjct: 26  ESRPFVLKKWNALAVWAWDVECDTCAICRVHLMEECLRCQ----SEPSAECYVVW 76


>U39742-5|AAK39199.1|  767|Caenorhabditis elegans Hypothetical
           protein C25F6.4 protein.
          Length = 767

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 266 FDTQIHYVISANSTVVDNNIPSP 198
           F T++H+  +AN T++   IP P
Sbjct: 343 FLTEVHFTSAANLTLLSEKIPPP 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,837,033
Number of Sequences: 27780
Number of extensions: 119119
Number of successful extensions: 261
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)