Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18m20
         (319 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            23   1.2  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   2.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   8.3  

>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 236 PKSHNGSVY 262
           PK HNGS+Y
Sbjct: 31  PKDHNGSIY 39


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 284 GLICLAFDTQIHYVISANSTVVDNN 210
           G+IC A      YV++A   ++D N
Sbjct: 185 GMICGATIISKRYVLTAAHCIIDEN 209


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 201 PRVXLHSTFLLRIFFY 154
           P + LH   L R FFY
Sbjct: 299 PPLSLHGQLLWREFFY 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,914
Number of Sequences: 438
Number of extensions: 1345
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)