Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18m12
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0153 - 22766805-22767023,22767662-22767940,22768294-227684...    31   0.63 
01_06_1238 + 35646647-35646932,35647333-35647950,35648732-356490...    27   7.7  

>05_05_0153 -
           22766805-22767023,22767662-22767940,22768294-22768401,
           22768500-22768779,22768871-22769174,22769367-22769975,
           22770186-22770411
          Length = 674

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
 Frame = -2

Query: 226 IKRIGLIVQEKSVSVHYSHTVGILHCD--PLDDLITQY----LDVIGLLSAH**GDILSY 65
           ++RI  I ++   ++ Y H + I+HCD  P + L+  Y    + VI L S+    D LS 
Sbjct: 505 LRRIQAIARQCLEALVYLHHLNIVHCDLKPENILMKSYSRCEIKVIDLGSSCFLTDNLSL 564

Query: 64  FIDFI*YGGPIRTTTTPYDEK 2
           ++    Y  P      PYD+K
Sbjct: 565 YVQSRSYRAPEVILGLPYDQK 585


>01_06_1238 +
           35646647-35646932,35647333-35647950,35648732-35649032,
           35649137-35649416,35649715-35649822,35650088-35650366,
           35650805-35650963
          Length = 676

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
 Frame = -2

Query: 226 IKRIGLIVQEKSVSVHYSHTVGILHCD--PLDDLITQY----LDVIGLLSAH**GDILSY 65
           + RI  I ++   ++ Y H + I+HCD  P + LI  Y    + VI L S+    D L  
Sbjct: 527 LPRIQAIARQCLEALVYLHHLRIIHCDLKPENILIKSYSRCEIKVIDLGSSCFLTDNLCL 586

Query: 64  FIDFI*YGGPIRTTTTPYDEK 2
           ++    Y  P      PYD++
Sbjct: 587 YVQSRSYRAPEVILGLPYDQR 607


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,952,893
Number of Sequences: 37544
Number of extensions: 249339
Number of successful extensions: 558
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)