Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18m12
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    28   4.0  
AC084197-15|AAN63425.1|  391|Caenorhabditis elegans Hypothetical...    27   9.2  
AC084197-14|AAM44396.1|  526|Caenorhabditis elegans Hypothetical...    27   9.2  
AC084197-13|AAM44395.1|  571|Caenorhabditis elegans Hypothetical...    27   9.2  

>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
            protein Y73F8A.5 protein.
          Length = 1019

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 456  RVVVKIGRRTVPQKTRKELRGHRD-ASLAIVGLTS 557
            RV+   GRR+ P  +R  LR HR+  + A + L S
Sbjct: 983  RVIFSKGRRSAPNNSRTTLRDHRENDNAAFISLDS 1017


>AC084197-15|AAN63425.1|  391|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.5c protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +2

Query: 509 APRPPRREFGDR 544
           AP PPRR FGDR
Sbjct: 304 APSPPRRSFGDR 315


>AC084197-14|AAM44396.1|  526|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.5b protein.
          Length = 526

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +2

Query: 509 APRPPRREFGDR 544
           AP PPRR FGDR
Sbjct: 439 APSPPRRSFGDR 450


>AC084197-13|AAM44395.1|  571|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.5a protein.
          Length = 571

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +2

Query: 509 APRPPRREFGDR 544
           AP PPRR FGDR
Sbjct: 484 APSPPRRSFGDR 495


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,443,820
Number of Sequences: 27780
Number of extensions: 201074
Number of successful extensions: 471
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)