Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18m06
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132... 71 7e-13
02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237 31 0.54
03_01_0560 + 4162206-4162607 30 1.2
01_01_0032 - 247971-248107,248369-248468,248861-248959,249617-24... 29 3.8
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 28 5.0
08_01_0555 - 4871996-4872652 28 6.6
09_02_0076 - 3959572-3960279 27 8.7
02_04_0585 - 24088344-24089366,24089833-24090075,24090305-240906... 27 8.7
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 27 8.7
>02_01_0195 +
1327071-1327187,1328060-1328203,1328340-1328431,
1329393-1329579,1329676-1329831,1329959-1330012
Length = 249
Score = 70.9 bits (166), Expect = 7e-13
Identities = 39/118 (33%), Positives = 64/118 (54%)
Frame = +3
Query: 252 RLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNG 431
++ P V+ HLK VY TL + +++ G Y+ + G L+ + G + L + P
Sbjct: 28 QISPAVQSHLKLVYLTLCVALAASAVGAYLHVALNI-GGMLTMLGCVGSIAWLFSVPVFE 86
Query: 432 KNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAE 605
+ R G LL L G S+GPL++ D SI++TA +GT + F CF+ AA++A+
Sbjct: 87 ERK--RFGILLAAALLEGASVGPLIKLAVDFDSSILVTAFVGTAIAFGCFTCAAIVAK 142
>02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237
Length = 572
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 363 AGFLSAIVGAGLMLMLIATPD-NGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSII 539
AG LS++ AG L + ++ T+ +G ++GFG+ G ++ V S +
Sbjct: 222 AGLLSSLAAAGTWLQVASSYGWPVSTTHCIVGAMVGFGIVFGGVNAVFWSSLARVSSSWV 281
Query: 540 ITALLGTTLVFVCF 581
I+ L+G + F+ +
Sbjct: 282 ISPLMGAAVSFIVY 295
>03_01_0560 + 4162206-4162607
Length = 133
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 348 FTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMG 497
F F G A+ A L L+L+A D + G+L G LT S+G
Sbjct: 58 FLSFTIGTALALAAAYLALLLLAATDKMLGADAVTGFLWGADLTGAASLG 107
>01_01_0032 -
247971-248107,248369-248468,248861-248959,249617-249781,
249860-249940,250316-250384,250695-250790,252232-252282,
253361-253419,254255-254324,254325-254553,254674-255098,
255361-255441
Length = 553
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 210 NTINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDM-FTRFQAGFLSAI 383
N ++ + + +N+ +Q +K + A+L TC S S Y D+ R+ +SAI
Sbjct: 422 NNVHALDQLRTIKNKANSTSQQFVKKMMASLPYTCQSQSPSPYFDLSLFRYDEKLISAI 480
>01_01_0827 +
6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = -2
Query: 604 SASIAAAEKHTNTRVVPSRAVIMID------GSTTLTYSSRGPMLMPDVNPNPSR*PSRK 443
++++ ++EK + VP +++ G T + SS GP D+N P+R P +K
Sbjct: 38 TSAVVSSEKESANSFVPHNGTGLVERISNDAGLTEVVGSSAGPTECIDLNKTPARKPKKK 97
>08_01_0555 - 4871996-4872652
Length = 218
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/68 (29%), Positives = 26/68 (38%)
Frame = +3
Query: 186 PSESKKNMNTINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQA 365
P N N FQ F N+FQ+R++ V L N L T + V QA
Sbjct: 145 PQGGNLNQNDNAFQDFFNNFQDRVDYAVYNALINQSGVLTNTLSNMMKSVADGSIAEHQA 204
Query: 366 GFLSAIVG 389
L + G
Sbjct: 205 AGLVYLQG 212
>09_02_0076 - 3959572-3960279
Length = 235
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 204 NMNTINFQTFVNSFQNRLEPPVRQHLKNVYATLMMT 311
N+N+ Q F N+FQ+R++ VR L N L+ T
Sbjct: 147 NLNSDVAQDFFNNFQDRIDYAVRHALINQSGVLVNT 182
>02_04_0585 -
24088344-24089366,24089833-24090075,24090305-24090655,
24090736-24090823,24091178-24091275,24091813-24092025,
24092150-24092245,24093124-24093195,24093909-24094067
Length = 780
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -2
Query: 598 SIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSRGPMLMP-DVNPNPSR*PSRKLVFFP 428
S+A N+R++P + +I G T+ S GP+ V P+ + P + L+ P
Sbjct: 536 SLANKPSPNNSRLLPQGSAALISGKTSALVGSGGPLSHGLVVTPSQTTGPPKSLIPAP 593
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 569 YQGSAEQSSYYDRWVNYTDIFKQGTHAHA*C 477
Y A Q++Y D+W++Y + G+ A C
Sbjct: 69 YGQDAIQAAYVDQWLDYAPVILSGSEFEAAC 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,062,573
Number of Sequences: 37544
Number of extensions: 329171
Number of successful extensions: 641
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -