Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18m05
         (179 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    26   0.76 
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    25   1.3  
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    25   1.8  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    23   4.0  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    23   7.1  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    22   9.3  

>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 32  ESLHFNVYXINRNVVDVIKCSVTSVAQWNK 121
           + +H N Y + R +V+      TSV  W+K
Sbjct: 619 DGVHSNGYSLVRKIVEYSDLEYTSVCPWDK 648


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 32  ESLHFNVYXINRNVVDVIKCSVTSVAQWNKIN 127
           + LH N+Y + R ++ V+  SV     W  +N
Sbjct: 78  KDLHPNIYSLLRLLIAVLAVSVVFFTAWGCVN 109


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 47  NVYXINRNVVDVIKCSVTSVAQWNKINDNFDAASLASVLFEK 172
           N   +++NV D     +T   +  K+ D FD++S    L  +
Sbjct: 302 NRVYVHKNVYDEFVSKLTEKVKTIKVGDGFDSSSAVGPLISQ 343


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 41  HFNVYXINRNVVDVIKCSVTSVAQWNK 121
           +F V  ++RN  D  KC V     W K
Sbjct: 384 YFGVLLVHRNARDDHKCRVKYGEDWEK 410


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 47  NVYXINRNVVDVIKCSVTSVAQWNK 121
           +VY   + V   + C V S+A W++
Sbjct: 531 SVYRFTKMVKKPVPCRVDSIAPWDQ 555


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 168 SNNTLAKEAASKLSFILFHCATL 100
           +NNT    A S L   + HC TL
Sbjct: 562 TNNTYGARAFSLLDAFVRHCITL 584


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 688,365
Number of Sequences: 5004
Number of extensions: 9184
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)